pepBayesFit-class: Class pepBayesFit.
In RGLab/pepBayes: Bayesian modeling of peptide microarray assay responses
Description
Class pepBayesFit holds the output of pepBayes models and
the sorted, summarized data. A handful of accessor functions are
implemented to access object slots. See pepBayesFit-methods.
Slots
- parameterOutput
A named list with trace of parameter values
generated as the fit progressed.
- ppb
A numeric matrix containing estimates of the posterior
probabilities of binding for eac subject and peptide combination.
- fitType
Character, "mcmc" or "ecm".
- slideInfo
A named list whose entries are various
data summaries and internal quantities required for the fit.
- algInfo
A named list whose values indicate which parameters
were fixed, how many iterations were performed, etc.
- algState
A list with parameter values at the most
recent iteration. Used to initialize or restart another pepBayes fit.
RGLab/pepBayes documentation built on May 8, 2019, 5:55 a.m.
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Description
Class pepBayesFit holds the output of pepBayes models and
the sorted, summarized data. A handful of accessor functions are
implemented to access object slots. See pepBayesFit-methods.
Slots
- parameterOutput
A named list with trace of parameter values generated as the fit progressed.
- ppb
A numeric matrix containing estimates of the posterior probabilities of binding for eac subject and peptide combination.
- fitType
Character, "mcmc" or "ecm".
- slideInfo
A named list whose entries are various data summaries and internal quantities required for the fit.
- algInfo
A named list whose values indicate which parameters were fixed, how many iterations were performed, etc.
- algState
A list with parameter values at the most recent iteration. Used to initialize or restart another pepBayes fit.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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