pepBayesFit-methods: pepBayesFit methods.
In RGLab/pepBayes: Bayesian modeling of peptide microarray assay responses

Methods for interacting with pepBayesFit objects.

position(x): Return the position of peptides.
peptide(x): Return the peptide amino acid sequences.
parTrace(x): Return trace of fitted parameter values across iterations of fitting algorithm.
ppb(x): Return the estimated posterior probability of binding for each subject /peptide combination.

pepBayesCalls(x, fdr): Return calls for a pepBayesFit at the desired fdr value.
pepBayesMcmc(x, ...): Run pepBayesMcmc, starting the chain at the last position of the parameters in x.
pepBayesEcm(x, ...): Run pepBayesEcm, starting the optimization at the last position of the parameters in x.