filter_subsets: Remove ASV/OTU/etc from a phyloseq object based on relative...
In RJ333/phyloseq2ML: Connects Phyloseq To Ranger And Keras
Description
Usage
Arguments
Value
View source: R/filter_taxa_functions.r
Description
This version of the filter_taxa function can be used with lists and
lapply or for loops.
Usage
1
filter_subsets(phyloseq_object, threshold, num_samples = 1)
Arguments
phyloseq_object
the object to be filtered
threshold
this relative abundance in percentage have to appear for an ASV,
than all ASV reads are kept
num_samples
the number of times (samples) the threshold has to be met
Value
The subsetted phyloseq object
RJ333/phyloseq2ML documentation built on June 2, 2020, 9:25 p.m.
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Description Usage Arguments Value
View source: R/filter_taxa_functions.r
Description
This version of the filter_taxa function can be used with lists and lapply or for loops.
Usage
1 | filter_subsets(phyloseq_object, threshold, num_samples = 1)
|
Arguments
phyloseq_object |
the object to be filtered |
threshold |
this relative abundance in percentage have to appear for an ASV, than all ASV reads are kept |
num_samples |
the number of times (samples) the threshold has to be met |
Value
The subsetted phyloseq object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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