Man pages for RSamyak/fmatrix
F-Matrix Manipulation
| bal_Fmat | Compute the 'most balanced' F-matrix |
| distance_Fmat | Evaluate Distance between Fmatrices |
| distance_Fmat_weighted | Evaluate weighted Distance between Fmatrices |
| entropy_pop | Entropy of a discrete distribution |
| frechet_var_pop | frechet variance of population |
| frechet_var_sample | frechet variance of sample |
| grapes-greater-than-d-grapes | Compare in signed distance order in reverse |
| grapes-greater-than-equals-grapes | Compare in dictionary order in reverse |
| grapes-less-than-d-grapes | Compare in signed distance order |
| grapes-less-than-equals-grapes | Compare in dictionary order |
| heatF | Plot Heatmap of F-matrix |
| hello | Hello, World! |
| is.hEncod | Check if a string is a valid hEncod |
| kingman_m | Compute the Kingman M matrix |
| precomp_bal_unb_kin | Precompute matrices for signed distance |
| rEncod | Generate random encodings |
| rEncod.single.Maliet2018 | Generate a random encoding |
| rEncod.single.SV2016 | Generate a random encoding |
| rEncod.single.uniform | Generate a random encoding |
| sa_mean | Estimate the Frechet Mean of a list of F-matrices using... |
| scaling_vector | Create a scaling vector for distances |
| signed_dist | Evaluate signed distance of F-matrix |
| sort_Flist | Sort a list of F-matrices |
| times_from_wt | Get coalescent times from weight matrix |
| tree_from_F | Generate tree in phylo form from F-matrix |
| unb_Fmat | Compute the 'most unbalanced' F-matrix |
| wt_from_times | Get weight matrix from coalescent times |
