inst/scripts/make-metadata.R

In RTCGA/RTCGA.CNV.20160128: CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project from 2016-01-28

meta <- data.frame(
    Title = c("ACC.CNV.20160128","BLCA.CNV.20160128","BRCA.CNV.20160128","CESC.CNV.20160128","CHOL.CNV.20160128","COADREAD.CNV.20160128","DLBC.CNV.20160128","ESCA.CNV.20160128","GBMLGG.CNV.20160128","HNSC.CNV.20160128","KICH.CNV.20160128","KIPAN.CNV.20160128","KIRC.CNV.20160128","KIRP.CNV.20160128","LAML.CNV.20160128","LIHC.CNV.20160128","LUAD.CNV.20160128","LUSC.CNV.20160128","MESO.CNV.20160128","OV.CNV.20160128","PAAD.CNV.20160128","PCPG.CNV.20160128","PRAD.CNV.20160128","SARC.CNV.20160128","SKCM.CNV.20160128","STAD.CNV.20160128","STES.CNV.20160128","TGCT.CNV.20160128","THCA.CNV.20160128","THYM.CNV.20160128","UCEC.CNV.20160128","UCS.CNV.20160128","UVM.CNV.20160128") ,
    Description = rep(" Package provides CNV datasets from The Cancer Genome Atlas
Project for all cohorts types from http://gdac.broadinstitute.org/. CNV
data format is explained on NCI TCGA wiki
https://wiki.nci.nih.gov/display/TCGA/Retrieving+Data+Using+the+Data+Matrix
Data taken from 2016-01-28 release. All release dates are
available here http://gdac.broadinstitute.org/runs/ . ", 33 ),
    BiocVersion = rep("3.4", 33 ),
    SourceUrl = "http://gdac.broadinstitute.org/",
    SourceVersion =  "2016-01-28" ,
    DataProvided = "TCGA",
    Maintainer = "Bioconductor Package Maintainer <maintainer@bioconductor.org>",
    RDataClass = rep("data.frame", 33 ),
    ResourceName =  c("ACC.CNV.20160128","BLCA.CNV.20160128","BRCA.CNV.20160128","CESC.CNV.20160128","CHOL.CNV.20160128","COADREAD.CNV.20160128","DLBC.CNV.20160128","ESCA.CNV.20160128","GBMLGG.CNV.20160128","HNSC.CNV.20160128","KICH.CNV.20160128","KIPAN.CNV.20160128","KIRC.CNV.20160128","KIRP.CNV.20160128","LAML.CNV.20160128","LIHC.CNV.20160128","LUAD.CNV.20160128","LUSC.CNV.20160128","MESO.CNV.20160128","OV.CNV.20160128","PAAD.CNV.20160128","PCPG.CNV.20160128","PRAD.CNV.20160128","SARC.CNV.20160128","SKCM.CNV.20160128","STAD.CNV.20160128","STES.CNV.20160128","TGCT.CNV.20160128","THCA.CNV.20160128","THYM.CNV.20160128","UCEC.CNV.20160128","UCS.CNV.20160128","UVM.CNV.20160128") )
write.csv(meta, file = "inst/extdata/metadata.csv", row.names = FALSE)