get_region_cnv_score: Copy Number Variation (CNV) scores for gene or region
In RTCGA/RTCGA.CNV: CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project
Description
Usage
Arguments
Value
Source
Description
The get.region.cnv.score() function returns Segment_Mean scores for selected region on selected chromosome.
By default it's MDM2 (chr12:69240000-69200000).
Usage
1
get.region.cnv.score(chr = "12", start = 69240000, stop = 69200000)
Arguments
chr
A chromosome of the region
start
Start of the region (in bp) on the chromosome
stop
Stop of the region (in bp) on the chromosome
Value
A data frame with cnv scores in the Segment_Mean column.
For each segment you will find a log2 - 1 score
(0 means there is no duplication nor deletion)
Source
http://gdac.broadinstitute.org/
RTCGA/RTCGA.CNV documentation built on May 8, 2019, 7:34 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Source
Description
The get.region.cnv.score() function returns Segment_Mean scores for selected region on selected chromosome. By default it's MDM2 (chr12:69240000-69200000).
Usage
1 | get.region.cnv.score(chr = "12", start = 69240000, stop = 69200000)
|
Arguments
chr |
A chromosome of the region |
start |
Start of the region (in bp) on the chromosome |
stop |
Stop of the region (in bp) on the chromosome |
Value
A data frame with cnv scores in the Segment_Mean column. For each segment you will find a log2 - 1 score (0 means there is no duplication nor deletion)
Source
http://gdac.broadinstitute.org/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.