CNV: CNV datasets from TCGA project
In RTCGA/RTCGA.cnv: CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project
Description
Usage
Details
Value
Source
Description
Package provides CNV datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA")
Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving+Data+Using+the+Data+Matrix
Converting RTCGA.CNV datasets from data.frames to Bioconductor classes is explained here convertTCGA.
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ACC.CNV
BLCA.CNV
BRCA.CNV
CESC.CNV
CHOL.CNV
COAD.CNV
COADREAD.CNV
DLBC.CNV
ESCA.CNV
GBM.CNV
GBMLGG.CNV
HNSC.CNV
KICH.CNV
KIPAN.CNV
KIRC.CNV
KIRP.CNV
LAML.CNV
LGG.CNV
LIHC.CNV
LUAD.CNV
LUSC.CNV
MESO.CNV
OV.CNV
PAAD.CNV
PCPG.CNV
PRAD.CNV
READ.CNV
SARC.CNV
SKCM.CNV
STAD.CNV
STES.CNV
TGCT.CNV
THCA.CNV
THYM.CNV
UCEC.CNV
UCS.CNV
UVM.CNV
Details
browseVignettes("RTCGA")
Value
Data frames with CNV data.
Source
http://gdac.broadinstitute.org/
RTCGA/RTCGA.cnv documentation built on May 8, 2019, 7:35 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Details Value Source
Description
Package provides CNV datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA")
Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving+Data+Using+the+Data+Matrix
Converting RTCGA.CNV datasets from data.frames to Bioconductor classes is explained here convertTCGA.
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 | ACC.CNV
BLCA.CNV
BRCA.CNV
CESC.CNV
CHOL.CNV
COAD.CNV
COADREAD.CNV
DLBC.CNV
ESCA.CNV
GBM.CNV
GBMLGG.CNV
HNSC.CNV
KICH.CNV
KIPAN.CNV
KIRC.CNV
KIRP.CNV
LAML.CNV
LGG.CNV
LIHC.CNV
LUAD.CNV
LUSC.CNV
MESO.CNV
OV.CNV
PAAD.CNV
PCPG.CNV
PRAD.CNV
READ.CNV
SARC.CNV
SKCM.CNV
STAD.CNV
STES.CNV
TGCT.CNV
THCA.CNV
THYM.CNV
UCEC.CNV
UCS.CNV
UVM.CNV
|
Details
browseVignettes("RTCGA")
Value
Data frames with CNV data.
Source
http://gdac.broadinstitute.org/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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