get_region_cnv_score: Copy Number Variation (CNV) scores for gene or region

Description Usage Arguments Value Source

Description

The get.region.cnv.score() function returns Segment_Mean scores for selected region on selected chromosome. By default it's MDM2 (chr12:69240000-69200000).

Usage

1
get.region.cnv.score(chr = "12", start = 69240000, stop = 69200000)

Arguments

chr

A chromosome of the region

start

Start of the region (in bp) on the chromosome

stop

Stop of the region (in bp) on the chromosome

Value

A data frame with cnv scores in the Segment_Mean column. For each segment you will find a log2 - 1 score (0 means there is no duplication nor deletion)

Source

http://gdac.broadinstitute.org/


RTCGA/RTCGA.cnv documentation built on May 8, 2019, 7:35 a.m.