get_region_cnv_score: Copy Number Variation (CNV) scores for gene or region
In RTCGA/RTCGA.cnv: CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project
Description
Usage
Arguments
Value
Source
Description
The get.region.cnv.score() function returns Segment_Mean scores for selected region on selected chromosome.
By default it's MDM2 (chr12:69240000-69200000).
Usage
1
get.region.cnv.score(chr = "12", start = 69240000, stop = 69200000)
Arguments
chr
A chromosome of the region
start
Start of the region (in bp) on the chromosome
stop
Stop of the region (in bp) on the chromosome
Value
A data frame with cnv scores in the Segment_Mean column.
For each segment you will find a log2 - 1 score
(0 means there is no duplication nor deletion)
Source
http://gdac.broadinstitute.org/
RTCGA/RTCGA.cnv documentation built on May 8, 2019, 7:35 a.m.
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Description Usage Arguments Value Source
Description
The get.region.cnv.score() function returns Segment_Mean scores for selected region on selected chromosome. By default it's MDM2 (chr12:69240000-69200000).
Usage
1 | get.region.cnv.score(chr = "12", start = 69240000, stop = 69200000)
|
Arguments
chr |
A chromosome of the region |
start |
Start of the region (in bp) on the chromosome |
stop |
Stop of the region (in bp) on the chromosome |
Value
A data frame with cnv scores in the Segment_Mean column. For each segment you will find a log2 - 1 score (0 means there is no duplication nor deletion)
Source
http://gdac.broadinstitute.org/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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