R/methylation_datasets.R

In RTCGA/RTCGA.methylation.20160128: Methylation datasets from The Cancer Genome Atlas Project from 2016-01-28

#' 
#' methylation datasets from TCGA project from 2016-01-28 release date
#'
#' Package provides methylation datasets from The Cancer Genome Atlas Project for all cohorts types from \url{http://gdac.broadinstitute.org/}.
#' Data were downloaded using \link{RTCGA-package} and contain snapshots for the release date: \code{2016-01-28} . Visit \pkg{RTCGA} site: \url{http://rtcga.github.io/RTCGA/}.
#' Use cases, examples and information about datasets in \pkg{RTCGA.methylation.20160128}  can be found here: \code{browseVignettes("RTCGA")}. Link to the data format explanation is in the package DESCRIPTION file.
#' 
#' @details \code{browseVignettes("RTCGA")}
#' 
#' @param metadata A logical indicating whether load data into the workspace (default, \code{FALSE}) or to only display the object's metadata (\code{TRUE}). See examples.
#' 
#' @examples
#' 
#' \dontrun{
#'  BRCA.methylation.20160128(metadata = TRUE) 
#'  BRCA.methylation.20160128(metadata = FALSE) 
#'  BRCA.methylation.20160128 
#' }
#' 
#' @import RTCGA
#' @import ExperimentHub
#' @importFrom utils read.csv
#' @importFrom AnnotationHub query
#' @format NULL
#' @source \url{http://gdac.broadinstitute.org/}
#' 
#' @aliases BRCA.methylation.20160128,COADREAD.methylation.20160128,GBMLGG.methylation.20160128,KIPAN.methylation.20160128,KIRC.methylation.20160128,KIRP.methylation.20160128,LAML.methylation.20160128,LGG.methylation.20160128,LUAD.methylation.20160128,LUSC.methylation.20160128,OV.methylation1.20160128,OV.methylation2.20160128,STAD.methylation.20160128,STES.methylation.20160128,UCEC.methylation.20160128 
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#'
"BRCA.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"COADREAD.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"GBMLGG.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"KIPAN.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"KIRC.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"KIRP.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"LAML.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"LGG.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"LUAD.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"LUSC.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"OV.methylation1.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"OV.methylation2.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"STAD.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"STES.methylation.20160128"
#' @name methylation.20160128 
#' @rdname methylation.20160128 
#' @format NULL 
#'
"UCEC.methylation.20160128"