Files in RaikOtto/ArtDeco
Alikeness Based on Regression on Transciptome DECOnvolution
DESCRIPTION
NAMESPACE
R/Deconvolve_NMF.R
R/Deconvolve_bseq_sc.R
R/Deconvolve_music.R
R/Deconvolve_transcriptome.R
R/Identify_marker_genes.R
R/Prepare_result_matrix_NMF.R
R/Prepare_result_matrix_bseqsc.R
R/Prepare_result_matrix_music.R
R/Simulation.R
R/Train_model_NMF.R
R/Train_model_bseqsc.R
R/Train_model_music.R
R/Utility.R
R/Variance_selection.R
R/Visualization.R
R/data.R
R/prepare_sample_result_matrix_NMF.R
R/prepare_sample_result_matrix_bseqsc.R
R/prepare_sample_result_matrix_music.R
README.md
data/Lawlor.csv.gz
data/deconvolution_results.csv
data/meta_data.csv
data/visualization_data.csv
data/visualization_data.csv.gz
inst/Data/Marker/Pancreas_marker_four_differentiation_stages.RDS
inst/Data/Marker/Pancreas_marker_four_differentiation_stages_Progenitor_HSC.RDS
inst/Data/Marker/Pancreas_marker_six_differentiation_stages.RDS
inst/Data/Meta_information/Stem_signatures.tsv
inst/Data/deconvolution_results.R
inst/Data/visualization_data.R
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Baron.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Baron.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Lawlor.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Segerstolpe.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Lawlor.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Segerstolpe.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Baron.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Lawlor.RDS
inst/Models/NMF/Alpha_Beta_Gamma_Delta_Segerstolpe.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Baron.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Baron.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Lawlor.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Segerstolpe.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Lawlor.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Segerstolpe.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Baron.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Hisc_Baron.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Lawlor.RDS
inst/Models/bseqsc/Alpha_Beta_Gamma_Delta_Segerstolpe.RDS
inst/Models/bseqsc/Lawlor.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Baron.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Baron.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Lawlor.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Hisc_Segerstolpe.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Lawlor.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Acinar_Ductal_Segerstolpe.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Baron.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Lawlor.RDS
inst/Models/music/Alpha_Beta_Gamma_Delta_Segerstolpe.RDS
inst/Models/music/my_model.RDS
inst/NEWS.Rd
inst/doc/artdeco.R
inst/doc/artdeco.Rmd
inst/doc/artdeco.html
man/Deconvolve_NMF.Rd
man/Deconvolve_bseq_sc.Rd
man/Deconvolve_music.Rd
man/Deconvolve_transcriptome.Rd
man/Lawlor.Rd
man/add_deconvolution_training_model_NMF.Rd
man/add_deconvolution_training_model_bseqsc.Rd
man/add_deconvolution_training_model_music.Rd
man/configure_graphics.Rd
man/create_PCA_deconvolution.Rd
man/create_heatmap_deconvolution.Rd
man/deconvolution_results.Rd
man/estimateParameters.Rd
man/identify_marker_genes.Rd
man/meta_data.Rd
man/quantify_similarity.Rd
man/remove_model.Rd
man/remove_model_NMF.Rd
man/remove_model_bseqsc.Rd
man/remove_model_music.Rd
man/show_models.Rd
man/show_models_NMF.Rd
man/show_models_bseqsc.Rd
man/show_models_music.Rd
man/simulateCellTypes.Rd
man/simulateCounts.Rd
man/simulateNegativeControls.Rd
man/visualization_data.Rd
tests/testthat.R
tests/testthat/test_sanity_tests.R
vignettes/artdeco.Rmd
