cmd_print: Neatly print commands

In RajLabMSSM/echoconda: echoverse module: conda environment management

Neatly print commands

Description

Neatly print commands sent to the command line.

Usage

cmd_print(
  cmd,
  raw = FALSE,
  basepath = TRUE,
  prefix = "...",
  wrap = "\n   ",
  verbose = TRUE
)

Arguments

cmd	Command string or list of strings.
raw	Print the raw cmd text.
basepath	For each component of cmd that is a path, shorten the path to just the basename.
prefix	When basepath=TRUE, append a prefix to the path.
wrap	If wrap is not NULL, use this to separate arguments with newlines.
verbose	Print messages.

Examples

cmd_print("fastqc -d ./fastqc_temp -o ${workdir}
          /fastqFileQC/${sample_name} -f fastq")

RajLabMSSM/echoconda documentation built on May 21, 2023, 10:19 a.m.