Files in RajLabMSSM/echolocatoR

Automated genomic fine-mapping

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md NEWS.md R/arg_list_handler.R R/arg_types.R R/bat_icon.R R/batapply.R R/check_deprecated.R R/check_genome.R R/check_required.R R/check_topSNPs.R R/construct_locus_dir.R R/construct_subset_path.R R/echolocatoR-package.R R/extract_snp_subset.R R/finemap_loci.R R/finemap_locus.R R/get_dataset_name.R R/get_locus_dir.R R/get_study_dir.R R/imports.R R/message_parallel.R R/messager.R R/package.R R/postprocess_data.R R/pvalues_to_symbols.R R/query_handler.R R/report_time.R R/set_tryCatch.R R/snps_to_condition.R R/startup.R R/steps.R R/zzz.R README.Rmd README.md R_tmp/COLOC.R R_tmp/CellLineOntology.R R_tmp/Circos.R R_tmp/DeepSEA.R R_tmp/Dey_DeepLearning.R R_tmp/GARFIELD.R R_tmp/GoShifter.R R_tmp/IMPACT.R R_tmp/MARGE.R R_tmp/OpenTargets.R R_tmp/PICS.R R_tmp/POLYFUN_h2_enrichment.R R_tmp/POLYFUN_h2_enrichment_SNPgroups.R R_tmp/POLYFUN_h2_enrichment_SNPgroups_plot.R R_tmp/QTL_boxplots.R R_tmp/SNP_distributions.R R_tmp/SURE.R R_tmp/SpliceAI.R R_tmp/coloc_summary.R R_tmp/cpvSNP.R R_tmp/directory.R R_tmp/dt_replace.R R_tmp/fGWAS.R R_tmp/mergeQTL.R R_tmp/merge_coloc_results.R R_tmp/merge_coloc_results_each.R R_tmp/psychENCODE.R R_tmp/replication.R R_tmp/validation.R inst/echolocatoR_2.0.2.pdf inst/hex/hexSticker.Rmd man/arg_list_handler.Rd man/arg_types.Rd man/batapply.Rd man/catalogueR.Rd man/check_deprecated.Rd man/check_genome.Rd man/check_required.Rd man/check_topSNPs.Rd man/construct_locus_dir.Rd man/construct_subset_path.Rd man/deprecated.Rd man/downloadR.Rd man/echoannot.Rd man/echoconda.Rd man/echodata.Rd man/echolocatoR-package.Rd man/extract_SNP_subset.Rd man/finemap_loci.Rd man/finemap_locus.Rd man/get_locus_dir.Rd man/get_study_dir.Rd man/lfm.Rd man/message_parallel.Rd man/pvalues_to_symbols.Rd man/query_handler.Rd man/snps_to_condition.Rd man/startup.Rd tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/test-check_deprecated.R tests/testthat/test-check_genome.R tests/testthat/test-check_required.R tests/testthat/test-check_topSNPs.R tests/testthat/test-extract_snp_subset.R tests/testthat/test-finemap_loci.R tests/testthat/test-finemap_locus.R tests/testthat/test-query_handler.R vignettes/QTLs.Rmd vignettes/docker.Rmd vignettes/echolocatoR.Rmd vignettes/summarise.Rmd