NEWS.md

In RajLabMSSM/echoplot: echoverse module: Locus plot creation for fine-mapping and colocalization studies

echoplot 0.99.7

Bug fixes

• construct_snp_labels:
  • Ensure data gets melted first.

echoplot 0.99.6

New features

• Implement rworkflows
• New exports:
  • get_palettes
  • list_namespace
• plot_locus:
  • pass up subset_labels arg.

Bug fixes

• Make pals an Import, and remove RColorBrewer.
• Fix Can't combine ..1$Method <factor<2f980>> and ..4$Method <ordered<4e1b3>>. error.
• Get rid of ggrepel: 7 unlabeled data points (too many overlaps). Consider increasing max.overlaps warnings.
• Fixed potential issue with getting top SNPs per Method in construct_snp_labels.
• Fixed colours encodes as numbers must be positive errors.
• Fix dot_summary_plot after construct_snp_labels updates.

echoplot 0.99.5

New features

• plot_locus_multi: New function to plot multi-GWAS/multi-ancestry results.
• get_transcripts_biotypes: New exported function to help users determine available biotypes.
• get_transcripts: new argument tx_biotypes= allows user to filter by biotypes. Passes up to plot_locus.
• plot_locus: changed qtl_prefixes --> qtl_suffixes to be consistent with merge naming strategy.
• Export snp_track_merged.
• Move functions from echoplot:
  • ROADMAP_plot and plotting subfunctions.
  • XGR_plot and plotting subfunctions.

Bug fixes

• transcript_model_track: Handle when 0 transcripts are returned, without error.
• get_transcripts_biotypes ==> get_tx_biotypes in all places.
• Document all functions.
• Fix GHA: @master --> @v2

echoplot 0.99.4

New features

• Replace "PLOT::" with "echoplot::"
• Add Issues templates.

echoplot 0.99.3

Bug fixes

• Fix slice_max bug in transcript_model_track.

echoplot 0.99.2

Bug fixes

• Removed echotabix as dep since these functions are now handled by echoannot.
• Updated GHA workflow.
• Nott2019 tracks working again.

echoplot 0.99.0

• Added a NEWS.md file to track changes to the package.

RajLabMSSM/echoplot documentation built on Oct. 24, 2023, 2:41 a.m.