getReactomeCache: Pulling Reactome mappings through biomaRt takes time. So we...
In RamsinghLab/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas
Description
Usage
Arguments
Value
View source: R/getReactomeCache.R
Description
Pulling Reactome mappings through biomaRt takes time. So we try not to do it.
More specifically, try to only pull updates, and then only for new builds.
Usage
1
getReactomeCache(species = "Homo sapiens", build = 84)
Arguments
species
species for which to get mappings (Homo sapiens)
build
numeric ENSEMBL build (84 by default)
Value
a list of REACTOME terms mapped to ENSEMBL IDs (both tx and gene)
RamsinghLab/TxDbLite documentation built on March 14, 2021, 10:49 a.m.
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Description Usage Arguments Value
View source: R/getReactomeCache.R
Description
Pulling Reactome mappings through biomaRt takes time. So we try not to do it. More specifically, try to only pull updates, and then only for new builds.
Usage
1 | getReactomeCache(species = "Homo sapiens", build = 84)
|
Arguments
species |
species for which to get mappings (Homo sapiens) |
build |
numeric ENSEMBL build (84 by default) |
Value
a list of REACTOME terms mapped to ENSEMBL IDs (both tx and gene)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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