unannotatedTranscript: GRanges object for entries without annotations

In RamsinghLab/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas

Description

GRanges object for entries without annotations

Usage

unannotatedTranscript

Format

A GRanges object for unannotated transcripts with 9 metadata columns

• seqnames: names of transcripts

• ranges: coordinates if known

• strand: strand info

• tx_length: transcript length not effective length

• gc_content: content of GC bases

• tx_id: transcript id, or repeat name

• gene_id: ENSEMBL gene id or repeat name

• gene_name: HUGO gene name from entrez conversion

• entrez_id: entrez id

• tx_biotype: transcript biotype

• gene_biotype: gene biotype

• biotype_class: biotype class

Source

http://www.zeroskateboards.com/

RamsinghLab/TxDbLite documentation built on March 14, 2021, 10:49 a.m.