tf_dataset: The list contains all information about E.coli TFBS taken...
In RedJane/tfbs.qsam: The analysis of TFBS by QSAM
Usage
Format
Source
See Also
Examples
Usage
1
Format
The format is:
List of 160
$ AcrR :List of 3
..$ AcrR1:List of 8
.. ..$ EC : chr "ECK120015994"
.. ..$ pos : num [1:2] 484933 484956
.. ..$ strand : chr "reverse"
.. ..$ seq : chr "gcgttagattTACATACATTTGTGAATGTATGTAccatagcacg"
.. ..$ effect : chr "-"
.. ..$ promoter: chr "acrAp"
.. ..$ from_tss: num -22.5
.. ..$ evidence: chr "[BCE|W|Binding of cellular extracts],[GEA|W|Gene expression analysis]"
[list output truncated]
Source
http://regulondb.ccg.unam.mx/menu/download/datasets/files/BindingSiteSet.txt
See Also
Examples
1
2
data(tf_dataset)
## maybe str(tf_dataset) ; plot(tf_dataset) ...
RedJane/tfbs.qsam documentation built on May 9, 2019, 9:37 a.m.
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Usage Format Source See Also Examples
Usage
1 |
Format
The format is: List of 160 $ AcrR :List of 3 ..$ AcrR1:List of 8 .. ..$ EC : chr "ECK120015994" .. ..$ pos : num [1:2] 484933 484956 .. ..$ strand : chr "reverse" .. ..$ seq : chr "gcgttagattTACATACATTTGTGAATGTATGTAccatagcacg" .. ..$ effect : chr "-" .. ..$ promoter: chr "acrAp" .. ..$ from_tss: num -22.5 .. ..$ evidence: chr "[BCE|W|Binding of cellular extracts],[GEA|W|Gene expression analysis]" [list output truncated]
Source
http://regulondb.ccg.unam.mx/menu/download/datasets/files/BindingSiteSet.txt
See Also
Examples
1 2 | data(tf_dataset)
## maybe str(tf_dataset) ; plot(tf_dataset) ...
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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