gobyDetectionData: Tidewater Goby Detection Data

In RobertDorazio/eDNAoccupancy: Multi-scale Occupancy Modeling of Environmental DNA Data

Tidewater Goby Detection Data

Description

A data set containing detections and non-detections of tidewater goby DNA in water samples collected at each of 39 sites located along 400 km of coastline in California and Oregon, USA. At each site, water samples were collected to extract the DNA of the tidewater goby (Eucyclogbobius newberryi), a federally endangered fish species living in estuaries, lagoons, and sloughs.

Usage

data(gobyDetectionData)

Format

A data frame consisting of 356 rows and the following 8 columns:

site:

location sampled for tidewater goby DNA

sample:

sample number (integer-valued)

pcr1:

binary indicator of whether tidewater goby DNA was detected (1) or not detected (0) in 1st PCR replicate of sample

pcr2:

binary indicator of whether tidewater goby DNA was detected (1) or not detected (0) in 2nd PCR replicate of sample

pcr3:

binary indicator of whether tidewater goby DNA was detected (1) or not detected (0) in 3rd PCR replicate of sample

pcr4:

binary indicator of whether tidewater goby DNA was detected (1) or not detected (0) in 4th PCR replicate of sample

pcr5:

binary indicator of whether tidewater goby DNA was detected (1) or not detected (0) in 5th PCR replicate of sample

pcr6:

binary indicator of whether tidewater goby DNA was detected (1) or not detected (0) in 6th PCR replicate of sample

Source

Schmelzle MC, Kinziger AP (2015) Data from: Using occupancy modeling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered aquatic species.

Dryad Digital Repository:

http://dx.doi.org/10.5061/dryad.6rs23

File name:

"Hierarchical Occupancy Model Input Data.xls"

References

Schmelzle MC, Kinziger AP (2016) Using occupancy modelling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered aquatic species. Molecular Ecology Resources 16: 895–908.

http://dx.doi.org/10.1111/1755-0998.12501

RobertDorazio/eDNAoccupancy documentation built on Sept. 5, 2023, 9:57 a.m.