plotTrace: Plot Trace of One or More Parameters of a Multi-scale...

In RobertDorazio/eDNAoccupancy: Multi-scale Occupancy Modeling of Environmental DNA Data

Plot Trace of One or More Parameters of a Multi-scale Occupancy Model

Description

Plots the Markov chain for each of 1-4 parameters of a multi-scale occupancy model.

Usage

plotTrace(fit, paramName, burnin = 1)

Arguments

fit	object of class occModel that contains data and previous state of the model's Markov chain
paramName	vector of names of parameters to be plotted
burnin	initial no. iterations of Markov chain to be omitted from plot

Details

This function plots the Markov chain created by occModel for each of 1-4 parameters of a multi-scale occupancy model.

Examples

data(gobyDetectionData)
detections = occData(gobyDetectionData, "site", "sample")
fit = occModel(detectionMats=detections)
plotTrace(fit, 'beta.(Intercept)', burnin=100)
plotTrace(fit, c('beta.(Intercept)', 'alpha.(Intercept)', 'delta.(Intercept)'), burnin=100)

RobertDorazio/eDNAoccupancy documentation built on Sept. 5, 2023, 9:57 a.m.