Man pages for RobertJDReid/bobhelpR
Helper functions for analysis of Y1000 BLAST results
| align_grid_row | align_grid_row |
| alignmentGroups | group fragmented alignments based on proximity to highest... |
| bobhelpR | bobhelpR R package |
| colonyCount | Identifies colonies on a scanned plate and returns number of... |
| fineSegment | Return number segments of aligned sequences taking gaps into... |
| gapPositions | find all positions of gaps in a sequence |
| getYeastUniProtInfo | gets yeast UniProt info from UniProt URL and saves to local... |
| justify_grid_edge | justify_grid_edge |
| loadYeastUniProtInfo | loads Yeast UniProt info from local file |
| maxGroupScore | find maximum score of alignment groups for each species |
| maxInContig | Find the maximum alignment score on each subject DNA contig... |
| read_plate | read a single screenmill plate and annotation data by... |
| readYKBLAST | read BLAST results file from the Y1000 BLAST server |
| save_plate_calibration | save_plate_calibration |
| seqPile | generate a vector of numbers based on start and end points of... |
| shift_crop | shift_crop |
| shift_grid | shifts plate grid as a unit |
| shift_grid_cell | shift_grid_cell |
| sm_resize_crop | sm_resize_crop |
| sm_resize_grid_cell | morph_grid_cell |
| sm_rotate_crop | sm_rotate_crop |
| standardize_grid | standardize_grid |
| sumGroupScores | Sum scores of grouped alignments |
| unGap | remove sequence insertions from sequence 2 based on gaps in... |
| use_calibration_from | use_calibration_from |
| view_plate | display single palte image with grid overlay |
