loadYeastUniProtInfo: loads Yeast UniProt info from local file

In RobertJDReid/bobhelpR: Helper functions for analysis of Y1000 BLAST results

loads Yeast UniProt info from local file

Description

Function reads file uniprot.txt from current directory which contains information on yeast proteins in the Swiss UniProt database. uniprot.txt is fetched from the Swiss uniprot site with command getYeastUniProtInfo

Usage

loadYeastUniProtInfo(
  path = "uniprot.txt",
  skip = 58,
  n_max = 6726,
  colwidths = c(75, 20, 11, 12, 11, 5, 4, 3),
  colnames = c("gene", "ORF", "swiss-prot-AC", "swiss-prot-name", "SGD-rec", "size-AA",
    "3D", "chromosome")
)

Arguments

path	The directory path to read the file Defaults to "uniprot.txt" in working directory but can be supplied in function call
skip	defaults to 58
colwidths	defaults to c(75, 20, 11, 12, 11, 5, 4, 3)
max	defaults to 6726
names	defaults to c("gene", "ORF", "swiss-prot-AC","swiss-prot-name","SGD-rec", "size-AA", "3D", "chromosome")

RobertJDReid/bobhelpR documentation built on July 7, 2023, 9:02 a.m.