Files in Roche-GSK/admiral

ADaM in R Asset Library

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/pull_request_template.md LICENSE.md NEWS.md R/admiral-package.R R/admiral_environment.R R/admiral_options.R R/call_derivation.R R/call_user_fun.R R/compute_age_years.R R/compute_duration.R R/compute_framingham.R R/compute_kidney.R R/compute_qual_imputation.R R/compute_scale.R R/consolidate_metadata.R R/create_query_data.R R/create_single_dose_dataset.R R/data.R R/derive_basetype_records.R R/derive_expected_records.R R/derive_extreme_event.R R/derive_extreme_records.R R/derive_joined.R R/derive_locf_records.R R/derive_merged.R R/derive_param_bmi.R R/derive_param_bsa.R R/derive_param_computed.R R/derive_param_doseint.R R/derive_param_exist_flag.R R/derive_param_exposure.R R/derive_param_extreme_record.R R/derive_param_framingham.R R/derive_param_map.R R/derive_param_qtc.R R/derive_param_rr.R R/derive_param_tte.R R/derive_param_wbc_abs.R R/derive_summary_records.R R/derive_var_analysis_ratio.R R/derive_var_anrind.R R/derive_var_atoxgr.R R/derive_var_base.R R/derive_var_chg.R R/derive_var_dthcaus.R R/derive_var_extreme_date.R R/derive_var_extreme_flag.R R/derive_var_joined_exist_flag.R R/derive_var_merged_ef_msrc.R R/derive_var_obs_number.R R/derive_var_ontrtfl.R R/derive_var_pchg.R R/derive_var_relative_flag.R R/derive_var_shift.R R/derive_var_trtdurd.R R/derive_var_trtemfl.R R/derive_vars_aage.R R/derive_vars_atc.R R/derive_vars_cat.R R/derive_vars_computed.R R/derive_vars_crit_flag.R R/derive_vars_dt.R R/derive_vars_dt_dtm_utils.R R/derive_vars_dtm.R R/derive_vars_dtm_to_dt.R R/derive_vars_dtm_to_tm.R R/derive_vars_duration.R R/derive_vars_dy.R R/derive_vars_extreme_event.R R/derive_vars_query.R R/derive_vars_transposed.R R/duplicates.R R/event.R R/filter_exist.R R/filter_extreme.R R/filter_joined.R R/filter_relative.R R/get_flagged_records.R R/get_summary_records.R R/globals.R R/period_dataset.R R/reexports.R R/restrict_derivation.R R/roxygen2.R R/slice_derivation.R R/transform_range.R R/tte_sources.R R/user_helpers.R R/user_utils.R README.md data-raw/adlb_grading/atoxgr_sources.R data-raw/create_admiral_adlb.R data-raw/create_admiral_adsl.R data-raw/create_country_codes.R data-raw/create_dose_freq_lookup.R data-raw/create_ex_single.R data-raw/create_example_qs.R data-raw/create_queries_and_queries_mh.R inst/adlb_grading/atoxgr_sources.R inst/cheatsheet/admiral_cheatsheet.pdf inst/deploy_pkgdown_website.R inst/templates/ad_adae.R inst/templates/ad_adcm.R inst/templates/ad_adeg.R inst/templates/ad_adex.R inst/templates/ad_adlb.R inst/templates/ad_adlbhy.R inst/templates/ad_admh.R inst/templates/ad_adpc.R inst/templates/ad_adpp.R inst/templates/ad_adppk.R inst/templates/ad_adsl.R inst/templates/ad_advs.R man/admiral-package.Rd man/admiral_adlb.Rd man/admiral_adsl.Rd man/assert_parameters_argument.Rd man/atoxgr_criteria_ctcv4.Rd man/atoxgr_criteria_ctcv5.Rd man/atoxgr_criteria_daids.Rd man/basket_select.Rd man/call_derivation.Rd man/call_user_fun.Rd man/censor_source.Rd man/chr2vars.Rd man/compute_age_years.Rd man/compute_bmi.Rd man/compute_bsa.Rd man/compute_dtf.Rd man/compute_duration.Rd man/compute_egfr.Rd man/compute_framingham.Rd man/compute_map.Rd man/compute_qtc.Rd man/compute_qual_imputation.Rd man/compute_qual_imputation_dec.Rd man/compute_rr.Rd man/compute_scale.Rd man/compute_tmf.Rd man/consolidate_metadata.Rd man/convert_blanks_to_na.Rd man/convert_date_to_dtm.Rd man/convert_dtc_to_dt.Rd man/convert_dtc_to_dtm.Rd man/convert_na_to_blanks.Rd man/count_vals.Rd man/country_code_lookup.Rd man/create_period_dataset.Rd man/create_query_data.Rd man/create_single_dose_dataset.Rd man/date_source.Rd man/default_qtc_paramcd.Rd man/derivation_slice.Rd man/derive_basetype_records.Rd man/derive_expected_records.Rd man/derive_extreme_event.Rd man/derive_extreme_records.Rd man/derive_locf_records.Rd man/derive_param_bmi.Rd man/derive_param_bsa.Rd man/derive_param_computed.Rd man/derive_param_doseint.Rd man/derive_param_exist_flag.Rd man/derive_param_exposure.Rd man/derive_param_extreme_record.Rd man/derive_param_framingham.Rd man/derive_param_map.Rd man/derive_param_qtc.Rd man/derive_param_rr.Rd man/derive_param_tte.Rd man/derive_param_wbc_abs.Rd man/derive_summary_records.Rd man/derive_var_age_years.Rd man/derive_var_analysis_ratio.Rd man/derive_var_anrind.Rd man/derive_var_atoxgr.Rd man/derive_var_atoxgr_dir.Rd man/derive_var_base.Rd man/derive_var_chg.Rd man/derive_var_dthcaus.Rd man/derive_var_extreme_dt.Rd man/derive_var_extreme_dtm.Rd man/derive_var_extreme_flag.Rd man/derive_var_joined_exist_flag.Rd man/derive_var_merged_ef_msrc.Rd man/derive_var_merged_exist_flag.Rd man/derive_var_merged_summary.Rd man/derive_var_obs_number.Rd man/derive_var_ontrtfl.Rd man/derive_var_pchg.Rd man/derive_var_relative_flag.Rd man/derive_var_shift.Rd man/derive_var_trtdurd.Rd man/derive_var_trtemfl.Rd man/derive_vars_aage.Rd man/derive_vars_atc.Rd man/derive_vars_cat.Rd man/derive_vars_computed.Rd man/derive_vars_crit_flag.Rd man/derive_vars_dt.Rd man/derive_vars_dtm.Rd man/derive_vars_dtm_to_dt.Rd man/derive_vars_dtm_to_tm.Rd man/derive_vars_duration.Rd man/derive_vars_dy.Rd man/derive_vars_extreme_event.Rd man/derive_vars_joined.Rd man/derive_vars_merged.Rd man/derive_vars_merged_lookup.Rd man/derive_vars_period.Rd man/derive_vars_query.Rd man/derive_vars_transposed.Rd man/dose_freq_lookup.Rd man/dt_level.Rd man/dthcaus_source.Rd man/dtm_level.Rd man/event.Rd man/event_joined.Rd man/event_source.Rd man/ex_single.Rd man/example_qs.Rd man/extend_condition.Rd man/extract_duplicate_records.Rd man/extract_unit.Rd man/filter_date_sources.Rd man/filter_exist.Rd man/filter_extreme.Rd man/filter_joined.Rd man/filter_not_exist.Rd man/filter_relative.Rd man/flag_event.Rd man/format.basket_select.Rd man/get_admiral_option.Rd man/get_duplicates_dataset.Rd man/get_flagged_records.Rd man/get_hori_data.Rd man/get_imputation_target_date.Rd man/get_imputation_target_time.Rd man/get_joined_data.Rd man/get_joined_sub_data.Rd man/get_many_to_one_dataset.Rd man/get_not_mapped.Rd man/get_one_to_many_dataset.Rd man/get_partialdatetime.Rd man/get_summary_records.Rd man/get_terms_from_db.Rd man/get_vars_query.Rd man/impute_dtc_dt.Rd man/impute_dtc_dtm.Rd man/list_all_templates.Rd man/list_tte_source_objects.Rd man/max_cond.Rd man/min_cond.Rd man/negate_vars.Rd man/params.Rd man/pipe.Rd man/print.adam_templates.Rd man/print.duplicates.Rd man/print.source.Rd man/print_named_list.Rd man/queries.Rd man/queries_mh.Rd man/query.Rd man/records_source.Rd man/reexport-desc.Rd man/reexport-exprs.Rd man/restrict_derivation.Rd man/restrict_imputed_dtc_dt.Rd man/restrict_imputed_dtc_dtm.Rd man/roxygen/meta.R man/roxygen/rdx_meta.R man/set_admiral_options.Rd man/signal_duplicate_records.Rd man/slice_derivation.Rd man/transform_range.Rd man/tte_source.Rd man/tte_source_objects.Rd man/use_ad_template.Rd man/yn_to_numeric.Rd tests/testthat.R tests/testthat/_snaps/admiral_options.md tests/testthat/_snaps/call_derivation.md tests/testthat/_snaps/call_user_fun.md tests/testthat/_snaps/compute_age_years.md tests/testthat/_snaps/compute_scale.md tests/testthat/_snaps/consolidate_metadata.md tests/testthat/_snaps/create_query_data.md tests/testthat/_snaps/create_single_dose_dataset.md tests/testthat/_snaps/derive_extreme_event.md tests/testthat/_snaps/derive_joined.md tests/testthat/_snaps/derive_merged.md tests/testthat/_snaps/derive_param_bmi.md tests/testthat/_snaps/derive_param_bsa.md tests/testthat/_snaps/derive_param_computed.md tests/testthat/_snaps/derive_param_extreme_record.md tests/testthat/_snaps/derive_param_map.md tests/testthat/_snaps/derive_param_qtc.md tests/testthat/_snaps/derive_param_rr.md tests/testthat/_snaps/derive_param_tte.md tests/testthat/_snaps/derive_var_base.md tests/testthat/_snaps/derive_var_dthcaus.md tests/testthat/_snaps/derive_var_extreme_date.md tests/testthat/_snaps/derive_var_merged_ef_msrc.md tests/testthat/_snaps/derive_var_ontrtfl.md tests/testthat/_snaps/derive_var_trtemfl.md tests/testthat/_snaps/derive_vars_aage.md tests/testthat/_snaps/derive_vars_atc.md tests/testthat/_snaps/derive_vars_cat.md tests/testthat/_snaps/derive_vars_crit_flag.md tests/testthat/_snaps/derive_vars_dt.md tests/testthat/_snaps/derive_vars_dtm.md tests/testthat/_snaps/derive_vars_dy.md tests/testthat/_snaps/derive_vars_query.md tests/testthat/_snaps/derive_vars_transposed.md tests/testthat/_snaps/dt_level.md tests/testthat/_snaps/duplicates.md tests/testthat/_snaps/get_summary_records.md tests/testthat/_snaps/period_dataset.md tests/testthat/_snaps/roxygen2.md tests/testthat/_snaps/slice_derivation.md tests/testthat/_snaps/transform_range.md tests/testthat/_snaps/user_helpers.md tests/testthat/_snaps/user_utils.md tests/testthat/test-admiral_options.R tests/testthat/test-call_derivation.R tests/testthat/test-call_user_fun.R tests/testthat/test-compute_age_years.R tests/testthat/test-compute_duration.R tests/testthat/test-compute_framingham.R tests/testthat/test-compute_kidney.R tests/testthat/test-compute_qual_imputation.R tests/testthat/test-compute_scale.R tests/testthat/test-consolidate_metadata.R tests/testthat/test-create_country_codes.R tests/testthat/test-create_query_data.R tests/testthat/test-create_single_dose_dataset.R tests/testthat/test-derive_basetype_records.R tests/testthat/test-derive_expected_records.R tests/testthat/test-derive_extreme_event.R tests/testthat/test-derive_extreme_records.R tests/testthat/test-derive_joined.R tests/testthat/test-derive_locf_records.R tests/testthat/test-derive_merged.R tests/testthat/test-derive_param_bmi.R tests/testthat/test-derive_param_bsa.R tests/testthat/test-derive_param_computed.R tests/testthat/test-derive_param_doseint.R tests/testthat/test-derive_param_exist_flag.R tests/testthat/test-derive_param_exposure.R tests/testthat/test-derive_param_extreme_record.R tests/testthat/test-derive_param_framingham.R tests/testthat/test-derive_param_map.R tests/testthat/test-derive_param_qtc.R tests/testthat/test-derive_param_rr.R tests/testthat/test-derive_param_tte.R tests/testthat/test-derive_param_wbc_abs.R tests/testthat/test-derive_summary_records.R tests/testthat/test-derive_var_analysis_ratio.R tests/testthat/test-derive_var_anrind.R tests/testthat/test-derive_var_atoxgr.R tests/testthat/test-derive_var_base.R tests/testthat/test-derive_var_chg.R tests/testthat/test-derive_var_dthcaus.R tests/testthat/test-derive_var_extreme_date.R tests/testthat/test-derive_var_extreme_flag.R tests/testthat/test-derive_var_joined_exist_flag.R tests/testthat/test-derive_var_merged_ef_msrc.R tests/testthat/test-derive_var_obs_number.R tests/testthat/test-derive_var_ontrtfl.R tests/testthat/test-derive_var_relative_flag.R tests/testthat/test-derive_var_shift.R tests/testthat/test-derive_var_trtdurd.R tests/testthat/test-derive_var_trtemfl.R tests/testthat/test-derive_vars_aage.R tests/testthat/test-derive_vars_atc.R tests/testthat/test-derive_vars_cat.R tests/testthat/test-derive_vars_computed.R tests/testthat/test-derive_vars_crit_flag.R tests/testthat/test-derive_vars_dt.R tests/testthat/test-derive_vars_dt_dtm_utils.R tests/testthat/test-derive_vars_dtm.R tests/testthat/test-derive_vars_dtm_to_dt.R tests/testthat/test-derive_vars_dtm_to_tm.R tests/testthat/test-derive_vars_duration.R tests/testthat/test-derive_vars_dy.R tests/testthat/test-derive_vars_extreme_event.R tests/testthat/test-derive_vars_query.R tests/testthat/test-derive_vars_transposed.R tests/testthat/test-dt_level.R tests/testthat/test-duplicates.R tests/testthat/test-event.R tests/testthat/test-filter_exist.R tests/testthat/test-filter_extreme.R tests/testthat/test-filter_joined.R tests/testthat/test-filter_relative.R tests/testthat/test-get_flagged_records.R tests/testthat/test-get_summary_records.R tests/testthat/test-period_dataset.R tests/testthat/test-restrict_derivation.R tests/testthat/test-roxygen2.R tests/testthat/test-slice_derivation.R tests/testthat/test-transform_range.R tests/testthat/test-user_helpers.R tests/testthat/test-user_utils.R vignettes/admiral.Rmd vignettes/adsl.Rmd vignettes/articles/website-versions.Rmd vignettes/bds_exposure.Rmd vignettes/bds_finding.Rmd vignettes/bds_tte.Rmd vignettes/concepts_conventions.Rmd vignettes/faq.Rmd vignettes/generic.Rmd vignettes/higher_order.Rmd vignettes/hys_law.Rmd vignettes/imputation.Rmd vignettes/lab_grading.Rmd vignettes/occds.Rmd vignettes/pk_adnca.Rmd vignettes/queries_dataset.Rmd vignettes/questionnaires.Rmd vignettes/visits_periods.Rmd