filenamesFromOSW: Get mzML filenames from osw RUN table.

In Roestlab/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms

Description

Get mzML filenames from osw RUN table.

Usage

filenamesFromOSW(dataPath, pattern)

Arguments

dataPath	(char) path to xics and osw directory.
pattern	(char) must be either *.osw or *merged.osw .

Value

A dataframe with three columns:

spectraFile	(string) as mentioned in RUN table of osw files.
spectraFileID	(string) ID in RUN table of osw files.
featureFile	(string) Path to the feature file.

Author(s)

Shubham Gupta, [e-mail]

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-14

Examples

dataPath <- system.file("extdata", package = "DIAlignR")
## Not run: 
filenamesFromOSW(dataPath, "*.osw")
filenamesFromOSW(dataPath, "*merged.osw")

## End(Not run)

Roestlab/DIAlignR documentation built on March 3, 2021, 9:09 a.m.