DATA.EX: Examplary single-cell RNA-sequencing data set

In RomanSchefzik/SimBPDD: Simulating differential distributions for Beta-Poisson models

Description

An examplary single-cell RNA-sequencing data set based on an excerpt of the data set by Pollen et al. (2014).

Usage

data(DATA.EX)

Format

A data matrix containing normalized expression values for 20 genes (rows) and 301 cells (samples; columns)

Source

Excerpt of the data set by Pollen et al. (2014), available at https://hemberg-lab.github.io/scRNA.seq.datasets/human/tissues/

References

A. A. Pollen, T. J. Nowakowski, J. Shuga, X. Wang, A. A. Leyrat, J. H. Lui, N. Li, L. Szpankowski, B. Fowler, P. Chen, N. Ramalingam, G. Sun, M. Thu, M. Norris, R. Lebofsky, D. Toppani, D. W. Kemp II, M. Wong, B. Clerkson, B. N. Jones, S. Wu, L. Knutsson, B. Alvarado, J. Wang, L. S. Weaver, A. P. May, R. C. Jones, M. A. Unger, A. R. Kriegstein, and J. A. A. West (2014). Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nature Biotechnology, 32:1053-1058.

RomanSchefzik/SimBPDD documentation built on May 24, 2021, 1:28 a.m.