Files in RomeroLab/pudms
Positive-Unlabeled Learning for the Analysis of Deep Mutational Scanning Datasets
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/ROCdata.R
R/adjusted_roc_curve.R
R/auc.R
R/check_duplicated_columns.R
R/coef.R
R/create_model_frame.R
R/create_protein_dat.R
R/create_seqmat.R
R/cv_grouped_dat.R
R/effective_n_seq.R
R/extractIndices.R
R/filter_mut_less_than_thresh.R
R/mut_to_seq.R
R/optimal_py1.R
R/plot.R
R/print.R
R/pudms-internal.R
R/pudms.R
R/pval_pu.R
R/return_tables.R
R/roc.average.R
R/rocker.R
R/rocplot.R
R/sparse.model.matrix.parallel.R
R/v.pudms.R
R/wald_pvalue.R
README.md
data-raw/rocker.R
data/rocker.rda
inst/extdata/Rocker_ref_mutations_filtered.txt.gz
inst/extdata/Rocker_ref_sequences_filtered.txt.gz
inst/extdata/Rocker_sel_mutations_filtered.txt.gz
inst/extdata/Rocker_sel_sequences_filtered.txt.gz
inst/quickexample/Rocker_CV_ROC.png
inst/quickexample/Rocker_parameters.csv
inst/quickexample/Rocker_ref_sequences_filtered.txt.gz
inst/quickexample/Rocker_sel_sequences_filtered.txt.gz
inst/quickexample/fit_PU_model.R
man/ROCdata.Rd
man/adjusted_roc_curve.Rd
man/auc.Rd
man/create_model_frame.Rd
man/create_protein_dat.Rd
man/create_seqmat.Rd
man/cv_grouped_dat.Rd
man/effective_n_seq.Rd
man/filter_mut_less_than_thresh.Rd
man/optimal_py1.Rd
man/pudms.Rd
man/pval_pu.Rd
man/roc.average.Rd
man/rocker.Rd
man/rocplot.Rd
man/sparse.model.matrix.parallel.Rd
man/v.pudms.Rd
man/wald_pvalue.Rd
pudms.Rproj
