create_model_frame: Create a model frame list from a grouped data set

In RomeroLab/pudms: Positive-Unlabeled Learning for the Analysis of Deep Mutational Scanning Datasets

Description

Create a model frame list from a grouped data set

Usage

create_model_frame(
  grouped_dat,
  order = 1,
  aggregate = T,
  refstate = NULL,
  nCores = 1,
  verbose = T
)

Arguments

grouped_dat	a grouped data set
order	an integer; 1= main effects, 2= main effects + pairwise effects
aggregate	a logical value
refstate	a character which will be used for the common reference state; the default is to use the most frequent amino acid as the reference state for each of the position.
nCores	the number of threads for computing.
verbose	a logical value

Value

a list (X,z,wei,seqId,blockidx, refstate)

RomeroLab/pudms documentation built on Jan. 2, 2021, 5:10 a.m.