create_protein_dat: Create a data set for protein

In RomeroLab/pudms: Positive-Unlabeled Learning for the Analysis of Deep Mutational Scanning Datasets

Description

Create a data set for protein

Usage

create_protein_dat(path_l, path_u, type = "sequences", WT = NULL)

Arguments

path_l	the file path for the labeled sequences. File type can be txt or txt.gzip
path_u	the file path for the unlabeled sequences
type	type of the input files; "sequences" or "mutations" based on the type of the input; a default is "sequences"
WT	a reference sequence if input type is "mutations"

Value

a data table containing (sequence, labeled, unlabeled, seqId)

RomeroLab/pudms documentation built on Jan. 2, 2021, 5:10 a.m.