In RubD/Giotto_site: Spatial Single-Cell Transcriptomics Toolbox

Docker Image

We have set up a Docker image linked to RStudio with Giotto pre-installed. Follow these instructions to create your own Docker container and run Giotto:

1. docker pull delron01/giotto:latest

2. docker run --rm -p 8787:8787 -e PASSWORD=mypassword delron01/giotto:latest

   • You may use any port as long as it is not in use.
   • You can set the password to whatever you like.

3. Open the browser of your choice and enter localhost:yourport.

   • Where yourport is either 8787 or the port you assigned it in step 2.

4. You will be directed to an RStudio login.

   Username: rstudio

   Password: mypassword

   • The password you enter will be whatever you declared in step 2.

5. Run the following: {R} library(Giotto)

Now you can run any analysis with Giotto!

RubD/Giotto_site documentation built on April 12, 2025, 6:46 p.m.