GetCorrData: GetCorrData

In RushingLab/BBS.SDM: Fit dynamic occupancy SDM to BBS data

Description

Filter raw BBS counts by species, add 0 counts, and latitude/longitude

Usage

GetCorrData(bbs_raw = bbs, path, alpha = NULL, common = NULL,
  start.year = 1966, end.year = 2016, statenum = NULL,
  countrynum = NULL, strata = NULL, bcr = NULL, buffer = 2,
  occ = TRUE, lon = NULL)

Arguments

alpha	4-letter alpha code for the species of interest
common	Common name for the species of interest
start.year	Optional start year (default is 1966)
end.year	Optional end year (default is most recent year of available BBS data)
statenum	Optional numeric vector containing the states of interest (see BBS website for code values)
countrynum	Optional numeric vector containing the countries of interest (840 = US, 124 = Canada, 484 = Mexico)
strata	Optional numeric vector containing the BBS strata of interest (see BBS website for code values)
bcr	Optional numeric vector containing the BCRs of interest (see BBS website for code values)
occ	Counts or presence/absence? (Default == presence/absence)
lon	Optional numeric vector containing maximum and minimum longitude of routes to keep
bbs	List containing the raw BBS counts, weather, and route info obtained from the function 'get_BBSn()'

Value

A .csv file containing the following fields:

routeID The unique 8 digit route ID for each route

Year The year that the count was conducted

aou The numeric code for the focal species

countN Total individuals of the focal species recorded at stop N (50-stop data) or N-9:N (10-stop data)

Latitude The latitude for the route

Longitude The longitude for the route

Stratum The BBS stratum for the route

BCR The Bird Conservation Region for the route

RushingLab/BBS.SDM documentation built on May 28, 2019, 11:21 a.m.