RemoveOutliers: RemoveOutliers
In RushingLab/BBS.SDM: Fit dynamic occupancy SDM to BBS data

Description Usage Arguments Details Value

Removes routes that are likely outliers (far outside "likely" breeding range)

1 2	RemoveOutliers(raw.counts = NULL, thresh = 15, k = 1, Write = TRUE, path = NULL)

`thresh`	Number of standard deviations beyond mean knn distance to be considered outlier (default = 5)
`k`	Number k on nearest neighbors
`counts`	Species count data frame obtained from GetSppCounts

Estimates for each route i the mean distance of each route to its k nearest neighbors (knn-distance). Any route with knn-distance greater than tresh*sd above the mean(knn-distance) is considered an outlier and removed from the data

Data frame with same format as counts but with outlier routes removed

RushingLab/BBS.SDM documentation built on May 28, 2019, 11:21 a.m.