ASCI: Score samples using the ASCI tool

Description Usage Arguments Details Value See Also Examples

View source: R/ASCI.R

Description

Score samples using the ASCI tool

Usage

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ASCI(taxain, sitein, tax = c("diatoms", "sba", "hybrid"), ...)

Arguments

taxain

data.frame for input taxonomy data

sitein

data.frame for input site data

tax

chr string indicating output to return from a specific taxa, must one to many of 'diatoms', 'sba', or 'hybrid', defaults to all

...

additional arguments passed to other funcions, e.g., rfpred

Details

Two indices for three taxonomy types are scored, pMMI and O/E for diatoms, soft-bodied algae, and hybrid. This function combines output from the pmmifun and oefun functions in a user-friendly format.

Value

A asci object with specific methods. See the examples for accessing.

See Also

pmmifun, oefun

Examples

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results <- ASCI(demo_algae_tax, demo_algae_sitedata)
scores(results)
Supp1_mmi(results)
Supp1_OE(results)
Supp2_OE(results)

SCCWRP/ASCI documentation built on Jan. 12, 2018, 6:33 p.m.