| abraid_modes | model run modes available to runABRAID |
| accuracy_stats | Functions to compute accuracy statistics for SDMs |
| bgDistance | Randomly sample pseudo-absence points from within a given... |
| bgSample | Randomly sample pseudo-absence points from a raster |
| biasGrid | Create a bias grid from polygons using a gaussian moving... |
| buildSP | Combine multiple shapefiles into a 'SpatialPolygons' object |
| checkOccurrence | Quality control for input occurrence data |
| checkRasters | Check that rasters confrom to a specified template |
| combinePreds | Combine multiple prediction rasters |
| Eastings_Northings | Converting Ordnance Survey grid references |
| extent2poly | Convert an extent object into a polygon |
| extractAdmin | Extract covariates by admin units |
| extractBatch | Extract a batch of occurrence data. Takes account of synoptic... |
| extractBhatt | Sample covariates according using a vector of three... |
| featureDensity | Create a raster of the density of points and polygons |
| gaussWindow | Generate a Gaussian window for smoothing rasters. |
| getConditionalEffectPlots | Combine conditional effect plots for ensemble BRT runs |
| getEffectPlots | Combine effect plots for ensemble BRT runs |
| getGAUL | Extract GAUL codes for polygon occurrence data |
| getRelInf | Summarize relative influence statistics for ensemble BRT runs |
| getStats | Get model validation statistics for a model object created by... |
| importRasters | Conveniently import raster files |
| makePreds | Using the model output from 'runBRT', makes a prediction to a... |
| masterMask | Create master mask from raster stack |
| maxExtent | Create an extent object encompassing a list of corrdinate... |
| nearestLand | Find nearest non-NA pixels to a set of points |
| occurrence2SPDF | Convert occurrence dataframe to a SpatialPointsDataFrame |
| osgb36 | British Ordnance Survey 1936 coordinate reference |
| percCover | Calculate the percentage cover of raster classes in a... |
| rasterPointCount | Calculate the number of points falling within each pixel in a... |
| runABRAID | Run a disease risk-mapping workflow for a single disease |
| runBRT | Run a boosted regression tree model using Sam's default... |
| sdWeighted | Calculate weighted standard deviation of a vector. |
| seegSDM-package | Streamlined functions for species distribution modelling in... |
| seegSDM_synthetic_data | Synthetic data for demonstrating the seegSDM package |
| selectLatestCovariates | Select the lastest layer for each covariate in a nested list. |
| splitIdx | Get a list of indices to split up a vector for parallel... |
| subsample | Sample a random subset of a dataframe containing presence and... |
| tempStand | Temporal standardisation of occurrence data |
| wgs84 | World Geodetic System 1984 coordinate reference |
