In SLINGhub/SLINGtools: Mass Spectrometry and Lipidomics Data Analysis in R

devtools::load_all()
library(SLINGtools)

mexp <- MidarExperiment()
mexp <- mexp |> 
  loadMasshunterCSV("Test_MH.csv") |> 
  loadMSOrganizerXLM("MSTemplate_Creator_forTest.xlsm")

mexp <- mexp |> 
  normalizeByISTD() |> 
  quantitateByISTD() |> 
  calcQC()

mexp <- mexp |> getDatasetFilteredQC(
  Intensity_BQC_min = 500,
  CV_BQC_max = 25, 
  SB_RATIO_min = 5,
  R2_min = 0.8,
  RQC_CURVE = "1" 
  )

SLINGtools::writeReportXLS(mexp, here("D:/my_report.xlsx"))

SLINGtools::writeReportXLS(data = mexp, filename = here(".testing/MyReport"))

SLINGhub/SLINGtools documentation built on April 20, 2023, 5:09 a.m.