GetDM: GetDM

In SMBC-NZP/BBSclim: Analysis of BBS data using correlated occupancy models to examine relationship between range dynamics and climate variables

Description

Create design matrices for Presence

Usage

GetDM(pao, cov_list, is.het, is.annual, psi = FALSE, coord.p = TRUE,
  coord.th = TRUE)

Arguments

pao	.pao file for the species of interest
cov_list	List containing the index of covariates to include in each model
is.het	Logical; Should heterogeniety in detection be modeled? (default = TRUE)
is.annual	Logical; Should detection vary annually? (default = TRUE)
coord.p	Logical; Should detection vary by lat/long (default = TRUE)
coord.th	Logical; Should local availabilty vary by lat/long (default = TRUE)
cov_names	Vector containing the names of all covariates
psi_list	List containing the index of covariates on psi to include in each model
index	Integer indicating which element in cov_list/psi_list to use

Value

A list containing 6 design matrices

dm1 Design matrix for psi, theta, theta1

dm2 Design matrix for gamma

dm3 Design matrix for epsilon

dm4 Design matrix for p

dm5 Design matrix for theta0

dm6 Design matrix for p.pi

SMBC-NZP/BBSclim documentation built on May 9, 2019, 11:20 a.m.