write_dm_and_run2: write_dm_and_run2

In SMBC-NZP/BBSclim: Analysis of BBS data using correlated occupancy models to examine relationship between range dynamics and climate variables

Description

Write design matrices to file and run correlated detection model in Presence. Note that this function calls Presence in a slightly different way than the 'write_dm_and_run()' function in the current version of RPresence

Usage

write_dm_and_run2(pao, cov_list, is.het, dm_list = NULL, modname,
  fixed = FALSE, inits = FALSE, maxfn = 32000, alpha = NULL,
  parse = FALSE)

Arguments

pao	.pao file for analysis
cov_list	List containing the covariates for each parameter
dm_list	List containing the design matrices for each parameter
modname	Optional name for .out file with model results
fixed	vector of fixed values (eg., fixed(1)=0, fixed(4)=.1 -> fixed=c(0,.1); names(fixed)=c(1,4))
maxfn	maximum number if iterations for optimization routine
out	Which output folder should results be written to?
initvals	vector of beta initial values

Value

A .out file containing the fitted model and parameters estimates (see ?occ.mod for details)

SMBC-NZP/BBSclim documentation built on May 9, 2019, 11:20 a.m.