limma_standard: Standard limma analysis

In SRenan/ISpaceR: What the package does (short line)

Description

A wrapper around limma functions to do a standard gene expression analysis. Fit a linear model for each gene, computes some statistics and returns the result in a table (or list of tables). By default the function tries a time course experiment.

Arguments

eset	An ExpressionSet. The expression set to analyse.
contrast	A character. The characteristic used to make contrasts. It should be a valid column name in the phenoData of eset.
FDRthresh	A numeric. The threshold used for filtering the False Discovery Rate.

Value

A named list of data.frame of the same length as the number of contrasts.

See Also

read_exprs_mat write_gea lmFit topTable

SRenan/ISpaceR documentation built on May 9, 2019, 11:42 a.m.