README.md

In SU-CompBio/SplicingFactory: Splicing Diversity Analysis for Transcriptome Data

SplicingFactory R package

The SplicingFactory R package uses transcript-level expression values to analyze splicing diversity based on various statistical measures, like Shannon entropy or the Gini index. These measures can quantify transcript isoform diversity within samples or between conditions. Additionally, the package analyzes the isoform diversity data, looking for significant changes between conditions.

Installation

You can install SplicingFactory using Bioconductor with:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SplicingFactory")

Alternatively, you can install the latest development version from github with:

install.packages("devtools")
devtools::install_github("esebesty/SplicingFactory")

SU-CompBio/SplicingFactory documentation built on March 28, 2022, 4:39 a.m.