SU-CompBio/SplicingFactory: Splicing Diversity Analysis for Transcriptome Data

The SplicingFactory R package uses transcript-level expression values to analyze splicing diversity based on various statistical measures, like Shannon entropy or the Gini index. These measures can quantify transcript isoform diversity within samples or between conditions. Additionally, the package analyzes the isoform diversity data, looking for significant changes between conditions.

Getting started

Package details

Bioconductor views AlternativeSplicing DifferentialSplicing RNASeq TranscriptomeVariant Transcriptomics
LicenseGPL-3 + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
SU-CompBio/SplicingFactory documentation built on March 28, 2022, 4:39 a.m.