num_individuals: Get number of individuals

In Sage-Bionetworks/dccmonitor: Monitor Data Validation

Get number of individuals

Description

Get the number of unique individuals for a study from the metadata files. Checks for ids in the manifest, individual metadata, and biospecimen metadata.

Usage

num_individuals(
  study_view,
  meta_types = c("manifest", "individual", "biospecimen")
)

Arguments

study_view	The file view for a study, with the columns 'file_data', where each element is a tibble with the data, and metadataType, where each element is the metadataType for the file.
meta_types	List of metadata types to gather ids from. Default is 'manifest', 'individual', and 'biospecimen'.

Value

Number of unique individual ids or 0 if no metadataTypes individual, biospecimen, manifest exist in 'study_view'.

Sage-Bionetworks/dccmonitor documentation built on May 28, 2022, 10:39 a.m.