Files in Sage-Bionetworks/fendR
Feature Engineering by Network Domain
.Rbuildignore
.gitignore
DESCRIPTION
Dockerfile
NAMESPACE
R/README.md
R/analyzeResults.R
R/dataProcessing.R
R/geneExpressionToViper.R
R/n3/README.md
R/n3/basicFendR.R
R/n3/fendR.R
R/n3/forestFendR.R
R/n3/modelAssessment.R
R/n3/n3FendR.R
R/runPCSFWithDTEnetwork.R
README.md
analysis/2019-01-17/nf1ProteinActivity.R
dev/README.MD
dev/assessNetworkPerformance.R
dev/assessNf1Results.R
dev/byDrugOnTestedDrugs/README.MD
dev/byDrugOnTestedDrugs/testKnownDrugs.R
dev/byDrugOnTestedDrugs/testKnownDrugs_NTAP.R
dev/byDrugOnTestedDrugs/testKnownDrugs_Sanger.R
dev/byDrugTestAllDrugs/README.MD
dev/byDrugTestAllDrugs/testKnownDrugs.R
dev/byDrugTestAllDrugs/testKnownDrugs_NTAP.R
dev/byDrugTestAllDrugs/testKnownDrugs_Sanger.R
dev/byGenotypeNF1/testNF1_allStatus.R
dev/byGenotypeNF1/testNF_Status.R
dev/formatDatasets/compareCellLineDatasets.R
dev/formatDatasets/createNf1Status.R
dev/formatDatasets/formatCcleData.R
dev/formatDatasets/formatPlexiNFdata.R
dev/formatDatasets/formatSangerData.R
dev/n3tests/baselinePerformance.R
dev/n3tests/basicFendRExample.R
dev/n3tests/crossDatasetPrediction.R
dev/n3tests/forestFendRExample.R
dev/n3tests/n3FendRCcle.R
dev/n3tests/testCrossDataset.R
dev/n3tests/varCompTesting.R
dev/n3tests/varCompWrapperFunction.R
dev/runAndStoreViper.R
dev/testDrugScreenRes.R
dev/testViper.R
dev/tf2gene.adj
fendR.Rproj
inst/CCLE_binary_mutation_matrix_ucscGenesFromCBioPortal.tsv
inst/CCLE_medianZscore_rnaSeq_ucscGenesFromCbioPortal.tsv.gz
inst/CTRP_v20_AUC_vales_by_drug.tsv
inst/CTRP_v20_drug_target_vals.tsv
inst/SANGER_CCLE_map.tsv
inst/SANGER_binaryEventMatrix.tsv
inst/SANGER_brainarray_rma_expr.tsv.gz
inst/SANGER_dose_response_AUC.tsv
inst/SANGER_drugGeneTargets.tsv
man/addGenotypeClass.Rd
man/addResponseClass.Rd
man/buildNetwork.Rd
man/cellLineMapping.Rd
man/doAllNetworkAssess.Rd
man/drugNameMapping.Rd
man/edgeList2matrix.Rd
man/getDrugIds.Rd
man/getDrugNames.Rd
man/getDrugTargets.Rd
man/getDrugs.Rd
man/getDrugsFromGraph.Rd
man/getGraphSaveVis.Rd
man/getViperForDrug.Rd
man/getViperProtExpressionEnrich.Rd
man/loadDrugGraph.Rd
man/loadEset.Rd
man/loadPhenotypeData.Rd
man/loadSampleData.Rd
man/loadTargetData.Rd
man/plotDrugs.Rd
man/plotDrugsAcrossData.Rd
man/renameDrugIds.Rd
man/runPcsfWithParams.Rd
man/runViperOnDset.Rd
man/shuffleTerminalsAndRun.Rd
man/translateMatrixIdentifiers.Rd
python/README.md
python/netXtoAracne.py
zipball/master/fendR_0.1.tar.gz
