API for Sage-Bionetworks/rSynapseClient
Synapse R Client from Sage Bionetworks

Global functions
.synapseGetDelete Man page
.synapsePostPut Man page
Activity Man page
Code Man page
Config.getOption Source code
Config.hasOption Source code
Config.hasSection Source code
ConfigParser Source code
Data Man page
Evaluation Man page
ExpressionData Man page
File Man page Source code
Folder Man page
GenotypeData Man page
ParsedUrl Source code
PhenotypeData Man page
Preview Man page
Project Man page
QueryResult Man page
RObject Man page
RsftpPackageIsAvailable Source code
Study Man page
SubmissionStatus Man page
SynapseAnnotations Source code
Table Man page
TableRowCount Source code
TableSchema Man page Source code
UserProfile Man page
WikiHeader Man page
WikiPage Man page Source code
addFile Man page
addFile,CachedLocation,character,character-method Man page
addFile,LocationOwner,character,character-method Man page
addFile,LocationOwner,character,missing-method Man page
addFile-methods Man page
addObject Man page
addObject,SynapseLocationOwner,ANY-method Man page
addObject,SynapseLocationOwner,data.frame-method Man page
addObject,SynapseLocationOwner,list-method Man page
addObject-methods Man page
addObjectMethod Source code
addToCacheMap Source code
allowParticipation Source code
annotValue Man page
annotValue,SynapseAnnotation,character-method Man page
annotValue,SynapseEntity,character-method Man page
annotValue-methods Man page
annotValue<- Man page
annotValue<-,SynapseAnnotation,character,character-method Man page
annotValue<-,SynapseAnnotation,character,integer-method Man page
annotValue<-,SynapseAnnotation,character,logical-method Man page
annotValue<-,SynapseAnnotation,character,numeric-method Man page
annotValue<-,SynapseEntity,character,character-method Man page
annotValue<-,SynapseEntity,character,integer-method Man page
annotValue<-,SynapseEntity,character,logical-method Man page
annotValue<-,SynapseEntity,character,numeric-method Man page
annotValue<--methods Man page
annotationNames Man page
annotationValues Man page
annotationValues,SynapseAnnotation-method Man page
annotationValues,SynapseEntity-method Man page
annotationValues-methods Man page
annotationValues<- Man page
annotationValues<-,SynapseAnnotation,list-method Man page
annotationValues<-,SynapseEntity,list-method Man page
annotationValues<--methods Man page
annotations Man page
annotations,SynapseEntity-method Man page
annotations-methods Man page
appendInterceptPrefix Source code
appendMockPrefix Source code
as.data.frame.QueryResult Source code
as.environment.GlobalCache Source code
as.list Man page
as.list.Entity Source code
as.list.SimplePropertyOwner Source code
as.list.SynapseAnnotations Source code
as.list.SynapseProperties Source code
as.list.TypedPropertyStore Source code
as.tableColumns Man page
as_list_SynapseAnnotations Source code
batchUrlTimeLimit Source code
buildSynapseUrl Source code
cacheMapFilePath Source code
checkAndReadFile Source code
checkBlackList Source code
checkBlackListGivenMyVersion Source code
checkCurlResponse Source code
checkInteger Source code
checkLatestVersion Source code
checkLatestVersionGivenMyVersion Source code
chunkedUploadFile Source code
collect Man page
collectAll Man page
combineUsedAndExecutedLists Source code
convertDataFrameTypeToSchemaType Source code
convertDatesToCharacters Source code
convertIntegersToCharacters Source code
copyProperties Source code
createBulkDownloadRequest Source code
createEntity Man page
createEntity,SynapseEntity-method Man page
createEntity,SynapseLocationOwner-method Man page
createEntity-methods Man page
createEntityMethod Source code
createListFromS4Object Source code
createListFromS4ObjectIntern Source code
createLockAccessRequirement Source code Source code
createMimeTypeMap Source code
createMissingDirectories Source code
createS4Object Source code
createS4ObjectFromList Source code
createTypedList Source code
createTypedListFromList Source code
createWikiUri Source code
curlRawUpload Source code
curlWriterClose Source code
curlWriterDownload Source code
curlWriterOpen Source code
decideTk Source code
defaultDownloadLocation Source code
defineEntityClass Source code
defineEntityConstructors Source code
defineRTypeFromPropertySchema Source code
defineS4ClassForSchema Source code
defineS4Classes Source code
defineS4ConstructorAndAccessors Source code
defineTypedList Source code
deleteAnnotation Man page
deleteAnnotation,SynapseAnnotation,character-method Man page
deleteAnnotation,SynapseEntity,character-method Man page
deleteAnnotation-methods Man page
deleteCache Source code
deleteEntity Man page
deleteEntity,SynapseEntity-method Man page
deleteEntity,character-method Man page
deleteEntity,list-method Man page
deleteEntity,numeric-method Man page
deleteEntity-methods Man page
deleteEntitySFTPAttachments Source code
deleteFile Man page
deleteFile,FileCache,character-method Man page
deleteFile,SynapseLocationOwner,character-method Man page
deleteFile-methods Man page
deleteObject Man page
deleteObject,SynapseLocationOwner,character-method Man page
deleteObject-methods Man page
deleteObjectMethod Source code
deleteProperty Man page
deleteProperty,SynapseAnnotation,character-method Man page
deleteProperty,SynapseEntity,character-method Man page
deleteProperty-methods Man page
dim.QueryResult Source code
doAuth Source code
doHmac Source code
doOnWeb Source code
doTerminalLogin Source code
doTkLogin Source code
doUsername Source code
doWelcome Source code
downloadEntity Man page
downloadEntity,SynapseEntity-method Man page
downloadEntity,SynapseLocationOwner-method Man page
downloadEntity,character-method Man page
downloadEntity,numeric-method Man page
downloadEntity-methods Man page
downloadFromService Source code
downloadFromServiceWithCaching Source code
downloadSftpFile Source code
downloadTableFileHandles Source code
downloadTableToCSVFile Source code
ensureTableSchemaIsRetrieved Source code
ensureTableSchemaStored Source code
entitiesToLoad Source code
entitySetExcecutedMethod Source code
entitySetUsedMethod Source code
executed Man page
executed<- Man page
fanoutDir Source code
fetch Man page
fileExists Source code
fileHandleMatchesUploadDestination Source code
fileHasFileHandleId Source code
fileHasFilePath Source code
fileMatchesTimestamp Source code
fileNameFromHeaders Source code
finalizeUpload Source code
findCachedFile Source code
findExistingEntity Source code
findLastResponseBreak Source code
findSynIdInSql Source code
findTeamIdForName Source code
formatAsISO8601 Source code
generateActivityUri Source code
generateAnnotationsUri Source code
generateEntityUri Source code
generateHMACSignature Source code
generateUniqueFileName Source code
generatedBy Man page
generatedBy<- Man page
getActivity Man page
getAllEntityInterfaces Source code
getAllInterfaces Source code
getArraySubSchema Source code
getCache Source code
getCacheMapFileContent Source code
getCachedInLocation Source code
getClassNameFromSchemaName Source code
getCredentialsForHost Source code
getCurlInfo Source code
getDirectorySequence Source code
getEffectivePropertySchemas Source code
getEffectivePropertyTypes Source code
getEffectiveSchemaTypes Source code
getEndpointForService Source code
getEndpointLocationForService Source code
getEndpointPrefixForService Source code
getEntity Man page Man page
getEntity,SynapseEntity-method Man page
getEntity,character-method Man page
getEntity,list-method Man page
getEntity,numeric-method Man page
getEntity-methods Man page
getExtension Source code
getFactoryForConcreteType Source code
getFileHandle Source code
getFileHandleFromEntityBundleJSON Source code
getFileHandleIdFromTableCell Source code
getFileLocation Man page Source code
getFromCacheMap Source code
getImplements Source code
getLocalFileInfo Source code
getMimeTypeForFile Source code
getMimeTypeMap Source code
getMockedFunction Source code
getNonNullableType Source code
getObject Man page
getObject,SynapseLocationOwner,character-method Man page
getObject-methods Man page
getObjectMethod Source code
getParentEntity Man page
getParentEntity,SynapseEntity-method Man page
getParentEntity-methods Man page
getPassword Source code
getPropertyFromSchemaAndName Source code
getPropertyTypes Source code
getResources Source code
getS4ClassNameFromSchemaName Source code
getS4MapName Source code
getSchemaCacheName Source code
getSchemaForProperty Source code
getSchemaFromCache Source code
getSchemaNameFromS4ClassName Source code
getSchemaPath Source code
getServerVersion Source code
getSessionToken Source code
getStatusCode Source code
getTableColumnTypeForDataFrameColumnType Source code
getTableSchemaColumnsFromId Source code
getTeamSubmissionEligibility Source code
getURLIntern Source code
getURLWithRetries Source code
getUploadDestinations Source code
getUsername Source code
getVersionInfo Source code
getVersionsEndpoint Source code
handleNAs Source code
hasAccessRequirement Source code Source code
hasObjects Source code
hasTk Source code
hasUnfulfilledAccessRequirements Source code
hmacSecretKey Man page Source code
identicalSimplePropertyOwner Source code
increaseBackoff Source code
initialBackOffSeconds Source code
initializeProperties Source code
initializeTableSchemaSlots Source code
initializeWikiProperties Source code
invalidateAPIKey Man page Source code
is.scalar Source code
isClassDefined Source code
isCurlDownload Source code
isEnum Source code
isErrorResponseStatus Source code
isExternalFileHandle Source code
isLoadable Source code
isNullSlot Source code
isNullableType Source code
isPrimitiveType Source code
isSftpDownload Source code
isSynapseId Source code
isVirtual Source code
jsonListToDataFrame Source code
lastModifiedTimestamp Source code
lastModifiedTimestampNonexistentOK Source code
length Man page
length.QueryResult Source code
listClassName Source code
listObjects Man page Source code
listToString Source code
listToURLParams Source code
loadCSVasDataFrame Source code
loadEntity Man page
loadEntity,SynapseLocationOwner-method Man page
loadEntity,character-method Man page
loadEntity,numeric-method Man page
loadEntity-methods Man page
localFileUnchanged Source code
lockFile Source code
lockdirPath Source code
logErrorToSynapse Source code Source code
majorVersion Source code
majorVersionDiff Source code
mapTypes Source code
matchURLHosts Source code
maxWaitTimeExceeded Source code
md5Query Source code
mergeColumns Source code
mergeDataFrames Source code
mock Source code
mockable.file.exists Source code
moveFile Man page
moveFile,FileCache-method Man page
moveFile,SynapseLocationOwner-method Man page
moveFile-methods Man page
names Man page
names.Entity Source code
names.QueryResult Source code
names.SynapseProperties Source code
newSubmissionPaginatedResults Source code
newSubmissionStatus Source code
now Source code
nowAsString Source code
ntegrationTest Source code
ntercept Source code
nullableType Source code
onAttach Source code
onLoad Source code
onWeb Man page
onWeb,SynapseEntity-method Man page
onWeb-methods Man page
parseEndpoint Source code
parseHttpHeaders Source code
parseJSONRecords Source code
parseResponseBody Source code
parseRowAndVersion Source code
parseSingleRow Source code
populateSchemaToClassMap Source code
populateTableSchema Source code
populateWikiPage Source code
properties Man page
properties,SynapseAnnotation-method Man page
properties,SynapseEntity-method Man page
properties-methods Man page
propertyNames Man page
propertyValue Man page
propertyValue,SynapseAnnotation,character-method Man page
propertyValue,SynapseEntity,character-method Man page
propertyValue-methods Man page
propertyValue<- Man page
propertyValue<-,SynapseAnnotation,character-method Man page
propertyValue<-,SynapseAnnotation,integer-method Man page
propertyValue<-,SynapseAnnotation,logical-method Man page
propertyValue<-,SynapseAnnotation,numeric-method Man page
propertyValue<-,SynapseEntity,character-method Man page
propertyValue<--methods Man page
propertyValues Man page
propertyValues,SynapseAnnotation-method Man page
propertyValues,SynapseEntity-method Man page
propertyValues-methods Man page
propertyValues<- Man page
propertyValues<-,SynapseAnnotation,list-method Man page
propertyValues<-,SynapseEntity,list-method Man page
propertyValues<--methods Man page
putSchemaToCache Source code
queryLimitAndOffset Source code
readDataFrameFromCSV Source code
readEntityDef Source code
readFile Source code
readS4ClassesToGenerate Source code
readSchema Source code
readSessionCache Source code
refreshSessionToken Man page Source code
renameObject Man page
renameObject,SynapseLocationOwner,character,character-method Man page
renameObject-methods Man page
renameObjectMethod Source code
resolvePermanentRedirects Source code
retrieveAttachedFileHandle Source code
rowMerge Source code
runTestSuite Source code
schemaTypeFromProperty Source code
selectUploadDestination Source code
selectUsed Source code
sendMessage Man page Source code
serializeObjects Source code
serviceEndpointCacheKey Source code
sessionFile Source code
sessionToken Man page Source code
setApiCredentials Man page Source code
setCache Source code
setPackageName Man page
setS4ClassNameForSchemaName Source code
setUsedMethod Source code
showContent Source code
showSchemaOrEntityId Source code
sleepTime Source code
startswith Source code
statusLines Source code
storeDataFrame Source code
storeEntity Man page
storeEntity,SynapseEntity-method Man page
storeEntity,SynapseLocationOwner-method Man page
storeEntity-methods Man page
storeEntityFiles Man page
storeEntityMethod Source code
storeEntityObjects Man page
stringMd5 Source code
stuffHeader Source code
stuffHeaderAuth Source code
stuffHeaderHmac Source code
submit Man page Source code
syn.file.info Source code
syn.readBin Source code
syn.seek Source code
synAddColumn Man page Source code
synAnnot Man page
synAnnotGetMethod Source code
synAnnotSetMethod Source code
synCreateEntityACL Man page Source code
synCreateEvaluation Source code
synCreateSubmission Source code
synCreateWiki Source code
synDelete Man page
synDeleteEntityACL Man page Source code
synDeleteRows Man page Source code
synDownloadTableColumns Man page Source code
synDownloadTableFile Source code
synFromJson Source code
synGet Man page Source code
synGetActivity Man page
synGetAnnotation Man page
synGetAnnotations Man page
synGetColumn Source code
synGetColumns Man page Source code
synGetEndpoints Man page Source code
synGetEntityACL Man page Source code
synGetEvaluation Man page Source code
synGetEvaluationByContentSource Man page Source code
synGetFile Source code
synGetOwnSubmissions Man page
synGetProperties Man page
synGetProperty Man page
synGetSubmission Man page Source code
synGetSubmissionStatus Man page Source code
synGetSubmissions Man page Source code
synGetUserProfile Man page Source code
synGetWiki Man page Source code
synGetWikiHeaders Man page Source code
synQuery Man page Source code
synRemoveColumn Man page Source code
synRestDELETE Man page Source code
synRestGET Man page Source code
synRestPOST Man page Source code
synRestPUT Man page Source code
synSetAnnotation Man page
synSetAnnotations Man page
synSetEndpoints Man page Source code
synSetProperties Man page
synSetProperty Man page
synStore Man page
synStoreFile Source code
synStoreMethod Source code
synTableQuery Man page Source code
synToJson Source code
synUpdateEntityACL Man page Source code
synUpdateUserProfile Source code
synUpdateWiki Source code
synapseAuthServiceEndpoint Man page Source code
synapseCacheDir Man page Source code
synapseClient Man page
synapseClient-package Man page
synapseDelete Man page Source code
synapseExecute Man page
synapseFileServiceEndpoint Man page Source code
synapseGet Man page Source code
synapseGetDelete Source code
synapseGetFollowingPermanentRedirects Source code
synapseLinkExternalFile Source code
synapseLogin Man page Source code
synapseLogout Man page Source code
synapsePortalEndpoint Man page Source code
synapsePost Man page Source code
synapsePostPut Source code
synapsePut Man page Source code
synapseQuery Man page Source code
synapseRefreshSessionToken Source code
synapseRepoServiceEndpoint Man page Source code
synapseRequest Source code
synapseResetEndpoints Man page Source code
synapseServiceEndpoint Source code
synapseVersionsServiceEndpoint Source code
terminalGetCredentials Source code
test Source code
testHMACSignature Source code
timePoint Source code
tkGetCredentials Source code
touOnWeb Man page Source code
trackProgress Source code
trimWhitespace Source code
unintercept Source code
uninterceptAll Source code
unlockFile Source code
unmock Source code
unmockAll Source code
updateEntity Man page
updateEntity,SynapseEntity-method Man page
updateEntity,SynapseLocationOwner-method Man page
updateEntity-methods Man page
updateEntityMethod Source code
updateS4Object Source code
uploadAndAddToCacheMap Source code
uploadFileHandleIdToTable Source code
uploadFileToEntity Source code
uploadOneChunk Source code
uploadStringToSynapseS3File Source code
uploadWikiAttachments Source code
used Man page
used<- Man page
userAgent Source code
userName Source code
userProfileUpdateAndDeleteUri Source code
validateFile Source code
validateTypedListElement Source code
versionIsBlackListed Source code
versionMeetsConstraint Source code
webRequestWithRetries Source code
wikiHeadersUri Source code
withRetries Source code
writeDataFrameToCSV Source code
writeFileAndUnlock Source code
writeSessionCache Source code
Sage-Bionetworks/rSynapseClient documentation built on May 10, 2018, 10 p.m.