R/AllGenerics.R

In Sage-Bionetworks/rSynapseClientRewrite: Synapse R Client from Sage Bionetworks

# TODO: Add comment
# 
# Author: furia
###############################################################################

setGeneric(
  name = "Folder",
  def = function(entity){
    standardGeneric("Folder")
  }
)

setGeneric(
  name = "RObject",
  def = function(entity){
    standardGeneric("RObject")
  }
)

setGeneric(
  name = "PhenotypeData",
  def = function(entity){
    standardGeneric("PhenotypeData")
  }
)

setGeneric(
  name = "GenotypeData",
  def = function(entity){
    standardGeneric("GenotypeData")
  }
)

setGeneric(
  name = "Preview",
  def = function(entity){
    standardGeneric("Preview")
  }
)

setGeneric(
  name = "ExpressionData",
  def = function(entity){
    standardGeneric("ExpressionData")
  }
)



setGeneric(
  name = "initialzeEntity",
  def = function(entity){
    standardGeneric("initialzeEntity")
  }
)

setGeneric(
  name = "storeEntityObjects",
  def = function(entity){
    standardGeneric("storeEntityObjects")
  }
)

setGeneric(
  name = "storeEntityFiles",
  def = function(entity){
    standardGeneric("storeEntityFiles")
  }
)


setGeneric(
  name = "createEntity",
  def = function(entity){
    standardGeneric("createEntity")
  }
)


setGeneric(
  name = "storeEntity",
  def = function(entity){
    standardGeneric("storeEntity")
  }
)

setGeneric(
  name = "storeFile",
  def = function(entity, filePath){
    standardGeneric("storeFile")
  }
)

setGeneric(
  name = "getArchiveFilePath",
  def = function(owner){
    standardGeneric("getArchiveFilePath")
  }
)

setGeneric(
  name = "setCacheRoot",
  def = function(object, path, clean, copy){
    standardGeneric("setCacheRoot")
  }
)

setGeneric(
  name = "getChildEntities",
  def = function(entity){
    standardGeneric("getChildEntities")
  }
)

setGeneric(  
  name = "updateEntity",
    def = function(entity){
      standardGeneric("updateEntity")
    }
)


setGeneric(
    name = "deleteEntity",
    def = function(entity){
      standardGeneric("deleteEntity")
    }
)

setGeneric(
       name = "getChildEntities",
       def = function(entity){
           standardGeneric("getChildEntities")
       }
)

setGeneric(
  name = "getParentEntity",
  def = function(entity){
    standardGeneric("getParentEntity")
  }
)


setGeneric(
  name = "Media",
  def = function(entity){
    standardGeneric("Media")
  }
)

setGeneric(
  name = "onWeb",
  def = function(entity){
    standardGeneric("onWeb")
  }
)

setGeneric(
  name = "downloadEntity",
  def = function(entity){
    standardGeneric("downloadEntity")
  }
)

setGeneric(
  name = "setFileCache",
  def = function(owner, fileCache){
    standardGeneric("setFileCache")
  }
)

setGeneric(
  name = "createArchive",
  def = function(owner){
    standardGeneric("createArchive")
  }
)

setGeneric(
  name = "unpackArchive",
  def = function(owner){
    standardGeneric("unpackArchive")
  }
)

setGeneric(
  name = "getEntity",
  def = function(entity){
    standardGeneric("getEntity")
  }
)

setGeneric(
  name = "getEntityInstance",
  def = function(entity){
    standardGeneric("getEntityInstance")
  }
)

setGeneric(
  name = "addGithubTag",
  def = function(entity, url){
    standardGeneric("addGithubTag")
  }
)


setGeneric(
  name = "loadEntity", 
  def=function(entity){
    standardGeneric("loadEntity")
  }
)

setGeneric(
  name = "SynapseLocationOwnerWithObjects",
  def = function(entity){
    standardGeneric("SynapseLocationOwnerWithObjects")
  }
)

setGeneric(
  name = "Code",
  def = function(entity){
    standardGeneric("Code")
  }
)

setGeneric(
  name = "Project",
  def = function(entity){
    standardGeneric("Project")
  }
)


setGeneric(
  name = "Data",
  def = function(entity){
    standardGeneric("Data")
  }
)


setGeneric(
  name = "Analysis",
  def = function(entity){
    standardGeneric("Analysis")
  }
)


setGeneric(
  name = "Step",
  def = function(entity){
    standardGeneric("Step")
  }
)

setGeneric(
  name = "Study",
  def = function(entity){
    standardGeneric("Study")
  }
)

setGeneric(
  name = "Link",
  def = function(entity){
    standardGeneric("Link")
  }
)


setGeneric(
  name = ".doGetObjects",
  def = function(x){
    standardGeneric(".doGetObjects")
  }
)

setGeneric(
  name = "summarizeCacheFiles",
  def = function(entity){
    standardGeneric("summarizeCacheFiles")
  }
)

setGeneric(
  name = "summarizeObjects",
  def = function(entity){
    standardGeneric("summarizeObjects")
  }
)

setGeneric(
    name = "getAnnotations",
   def = function(entity){
     standardGeneric("getAnnotations")
   }
)

setGeneric(
    name = "loadObjectsFromFiles",
    def = function(owner){
      standardGeneric("loadObjectsFromFiles")
    }
)

setGeneric(
  name = "cacheDir",
  def = function(object){
    standardGeneric("cacheDir")
  }
)
setGeneric(
  name = "files",
  def = function(object){
    standardGeneric("files")
  }
)

setGeneric(
  name = ".generateTmpCacheFileRelativePath",
  function(owner, objectName, suffix){
    standardGeneric(".generateTmpCacheFileRelativePath")
  }
)

setGeneric(
  name = ".generateCacheFileRelativePath",
  def = function(owner, objectName, suffix){
    standardGeneric(".generateCacheFileRelativePath")
  }
)

setGeneric(
  name = ".generateCacheFileName",
  def = function(owner, objectName, suffix){
    standardGeneric(".generateCacheFileName")
  }
)

setGeneric(
  name = ".generateTmpCacheFileName",
  def = function(owner, objectName){
    standardGeneric(".generateTmpCacheFileName")
  }
)

setGeneric(
  name = ".cacheObject",
  def = function(owner, objectName){
    standardGeneric(".cacheObject")
  }
)

setGeneric(
  name = ".tmpCacheObject",
  def = function(destFile){
    standardGeneric(".tmpCacheObject")
  }
)

setGeneric(
  name = ".tmpCacheObject",
  def = function(object, objectName){
    standardGeneric(".tmpCacheObject")
  }
)

setGeneric(
  name = ".renameCacheObjectFromTmp",
  def = function(object, srcName, destName){
    standardGeneric(".renameCacheObjectFromTmp")
  }
)

setGeneric(
  name = ".deleteTmpCacheFile",
  def = function(owner, objectName){
    standardGeneric(".deleteTmpCacheFile")
  }
)

setGeneric(
  name = ".deleteCacheFile",
  def = function(owner, objectName){
    standardGeneric(".deleteCacheFile")
  }
)

setGeneric(
  name = ".loadCachedObjects",
  def = function(owner){
    standardGeneric(".loadCachedObjects")
  }
)


setGeneric(
  name = "getEnv",
  def = function(object){
    standardGeneric("getEnv")
  }
)


setGeneric(
  name = ".extractEntityFromSlots",
  def = function(object){
    standardGeneric(".extractEntityFromSlots")
  }
)

setGeneric(
  name = ".populateSlotsFromEntity",
  def = function(object, entity, json){
    standardGeneric(".populateSlotsFromEntity")
  }
)

setGeneric(
  name = "deleteProperty",
  def = function(object, which){
    standardGeneric("deleteProperty")
  }
)

setGeneric(
  name = "properties",
  def = function(object){
    standardGeneric("properties")
  }
)

setGeneric(
  name = "properties<-",
  def = function(object, value){
    standardGeneric("properties<-")
  }
)

setGeneric(
  name = "propertyValues",
  def = function(object){
    standardGeneric("propertyValues")
  }
)

setGeneric(
  name = "propertyValues<-",
  def = function(object, value){
    standardGeneric("propertyValues<-")
  }
)

setGeneric(
  name = "annotations",
  def = function(object){
    standardGeneric("annotations")
  }
)

setGeneric(
  name = "propertyValue",
  def = function(object, which){
    standardGeneric("propertyValue")
  }
)

setGeneric(
  name = "propertyValue<-",
  def = function(object, which, value){
    standardGeneric("propertyValue<-")
  }
)

setGeneric(
  name = "annotations<-",
  def = function(object, value){
    standardGeneric("annotations<-")
  }
)

setGeneric(
  name = "annotationNames",
  def = function(object){
    standardGeneric("annotationNames")
  }
)

setGeneric(
  name = "annotValue",
  def = function(object, which){
    standardGeneric("annotValue")
  }
)

setGeneric(
  name = "deleteAnnotation",
  def = function(object, which){
    standardGeneric("deleteAnnotation")
  }
)

setGeneric(
  name = "annotValue<-",
  def = function(object, which, value){
    standardGeneric("annotValue<-")
  }
)

setGeneric(
  name = "annotationValues",
  def = function(object){
    standardGeneric("annotationValues")
  }
)

setGeneric(
  name = "annotationValues<-",
  def = function(object, value){
    standardGeneric("annotationValues<-")
  }
)

setGeneric(
  name = "TypedPropertyStore",
  def = function(file, data, json){
    standardGeneric("TypedPropertyStore")
  }
)

setGeneric(
  name = "setUpdatePropValue",
  def = function(object, which, value, type){
    standardGeneric("setUpdatePropValue")
  }
)
setGeneric(
  name = "propertyNames",
  def = function(object){
    standardGeneric("propertyNames")
  }
)

setGeneric(
  name = "propertyValues",
  def = function(object){
    standardGeneric("propertyValues")
  }
)

setGeneric(
  name = "propertyType",
  def = function(object, which){
    standardGeneric("propertyType")
  }
)

setGeneric(
  name = "getProperty",
  def = function(object, which){
    standardGeneric("getProperty")
  }
)

setGeneric(
  name = "setProperty",
  def = function(object, which, value){
    standardGeneric("setProperty")
  }
)

setGeneric(
  name = "getFileCache",
  def = function(archivePath){
    standardGeneric("getFileCache")
  }
)

setGeneric(
  name = "availFileCaches",
  def = function(factory){
    standardGeneric("availFileCaches")
  }
)

setGeneric(
  name = "resetFactory",
  def = function(factory){
    standardGeneric("resetFactory")
  }
)

## Generic method for addObject
setGeneric(
  name = "addObject",
  def = function(owner, object, name, unlist){
    standardGeneric("addObject")
  }
)

## generic method for deleteObject
setGeneric(
  name = "deleteObject",
  def = function(owner, which){
    standardGeneric("deleteObject")
  }
)

## Generic method for renameObject
setGeneric(
  name = "renameObject",
  def = function(owner, which, name){
    standardGeneric("renameObject")
  }
)

## Generic method for getObject
setGeneric(
  name = "getObject",
  def = function(owner, which){
    standardGeneric("getObject")
  }
)

setGeneric(
  name = "addFile",
  def = function(entity, file, path){
    standardGeneric("addFile")
  }
)

setGeneric(
  name = "FileCache",
  def = function(cacheRoot, object, archiveFile){
    standardGeneric("FileCache")
  }
)

setGeneric(
  name = "addFileMetaData",
  def = function(object, srcPath, destPath){
    standardGeneric("addFileMetaData")
  }
)

setGeneric(
  name = "deleteFile",
  def = function(entity, file){
    standardGeneric("deleteFile")
  }
)

setGeneric(
  name = "moveFile",
  def = function(entity, src, dest){
    standardGeneric("moveFile")
  }
)

setGeneric(
  name = "addValue",
  def = function(object, name, value){
    standardGeneric("addValue")
  }
)

setGeneric(
  name = "deleteValue",
  def = function(object, name, value){
    standardGeneric("deleteValue")
  }
)

setGeneric(
  name = "getValue",
  def = function(object, name, value){
    standardGeneric("getValue")
  }
)


setGeneric(
  name = "SynapseEntity",
  def = function(entity){
    standardGeneric("SynapseEntity")
  }
)

setGeneric(
  name = "synapseEntityKind",
  def = function(entity){
    standardGeneric("synapseEntityKind")
  }
)

setGeneric(
  name = "synapseEntityKind<-",
  def = function(entity, value){
    standardGeneric("synapseEntityKind<-")
  }
)

setGeneric(
  name = "refreshAnnotations",
  def = function(entity){
    standardGeneric("refreshAnnotations")
  }
)