PMF: The variant allele frequencies of somatic single nucleotide...

In SamGG/densitycut: An Efficient and Versatile Topological Approach to Clustering Biological Data

Description

The variant allele frequencies of somatic single nucleotide variants from whole genome sequencing of a primary myelofibrosis patient at three time points

Usage

PMF

Format

A list with three fields

• x. A matrix of allele frequencies

• y. Clustering labels from the original publication

• metadata. A list with one field: the gene names of each mutation

References

Engle, E., Fisher, D., Miller, C., McLellan, M., Fulton, R., Moore, D., Wilson, R., Ley,T., and Oh, S. (2015). Clonal evolution revealed by whole genome sequencing in a case of primary myelofibrosis transformed to secondary acute myeloid leukemia. Leukemia, 29(4), 869-876.

SamGG/densitycut documentation built on Oct. 30, 2019, 11:48 p.m.