fromW4M: fromW4M

Description Usage Arguments Value Author(s) Examples

View source: R/functions.R

Description

Creating a ExpressionSet object from the 3 'dataMatrix.tsv', 'sampleMetadata.tsv' and 'variableMetadata.tsv' tabulated files

Usage

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2
fromW4M(dirC, namePatternC = "", fileTableNamesVc = c("dataMatrix",
  "sampleMetadata", "variableMetadata"), verboseL = TRUE)

Arguments

dirC

Character: directory containing the 3 .tsv files

namePatternC

Character: optional file name pattern common to all three file names (e.g., when you want to distinguish between two sets of files within the same directory)

fileTableNamesVc

Vector of characters: if your file names do not contain the standard 'dataMatrix', 'sampleMetadata', and 'variableMetadata' patterns (e.g. if you use 'profile', 'observation', and 'feature' instead), please indicate them here

verboseL

Logical: should comments be printed?

Value

ExpressionSet instance

Author(s)

Etienne Thevenot, [email protected]

Examples

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sacSet <- fromW4M(file.path(path.package("ropls"), "extdata"))

SamGG/ropls documentation built on July 31, 2018, 12:10 a.m.