Man pages for SaskiaSchirmer/CONSURE
Estimating Spatially Continuous Survival, Migratory Connectivity and Recovery Probability
| bootstrap_marking_data | This function bootstraps the marking data for every area of... |
| bootstrap_quantiles | 0.25- and 0.95- confidence intervals for bootstrapped data. |
| CONSURE | CONSURE: Spatially continuous survival, use of space and... |
| destination | helper function for destination area |
| est_kde | estimate raw density of recovered individuals |
| est_lm | linear model of kernel density estimate |
| est_m | estimate migratory connectivity |
| est_parameters | linear model of kernel density estimate |
| est_r | recovery probability estimator |
| est_s | survival estimator |
| est_uncertainty | linear model of kernel density estimate |
| f_f | density function for recovered individuals only |
| f_f_sub | subdensity function for recovered individuals |
| f_nf_sub | subdensity function for not seen individuals |
| get_bootstrap_parameters | Extracting bootstrapped parameters. |
| init_bootstrapped_datasets | This function initializes a list of bootstrapped data sets... |
| mark_recapture_object | helper function for mark recapture object |
| mro1D | simulated data for the continuous approach (1D) |
| mro2D | simulated data for the continuous approach (2D) |
| new_destination | constructor for destination area |
| new_mark_recapture_object | constructor for mark recapture object |
| new_origin | constructor for the origin |
| origin | helper function for origin |
| par_grid | creates grid with function values |
| plot_age_distribution | plot age distribution of raw recoveries of real world data |
| plot_gof_of_lm | plot goodness of fit for linear model used to estimate... |
| plot_kde | plot kernel density estimate and true density for simulated... |
| plotly_param | plot 3D plot using plotly |
| plot_m | plot true and estimated migratory connectivity |
| plot_msr | plot initial situation |
| plot_profile | plot parameter values (and bootstrape confidence interval, if... |
| plot_raw_recoveries | plot raw recoveries of real world data |
| plot_s | plot true and estimated survival function |
| p_nf | overall probability to be not seen |
| profile_line | Creates a linear profile line. |
| profile_of_parameter | Parameter values along a profile line |
| profile_points | Parameter values along a segmentized profile line |
| project_df | projects data.frame to another coordinate system |
| project_mark_recapture | projects mark_recapture_object to another coordinate system |
| project_window | projects owin-object to another coordinate system |
| raster_param | Raster stack of parameter values and bootstrap confidence... |
| rec_inds_func | calculates number of recovered individuals from marked and... |
| rename_data | rename recovery data with default column names |
| robins_init | raw real-world data for robins |
| sim_contin | simulation function for mark-recovery setting |
| wrap_profile_of_param | Parameter values along a profile line |
