plot_raw_recoveries: plot raw recoveries of real world data

In SaskiaSchirmer/CONSURE: Estimating Spatially Continuous Survival, Migratory Connectivity and Recovery Probability

plot raw recoveries of real world data

Description

This function plots the distribution of recoveries in the real world data in Europe and Africa.

Usage

plot_raw_recoveries(
  mark_recapture_object,
  pdf = FALSE,
  pdf_name = "raw_recoveries.pdf",
  origin_names = NULL,
  facet_by_age = FALSE,
  facet_by_area = FALSE,
  age_min = 0,
  age_max = NULL,
  xname = "longitude",
  yname = "latitude",
  timename = "age",
  mark_area_name = "mark_area",
  plot_title = "",
  map = NULL,
  prj = "+proj=longlat"
)

Arguments

mark_recapture_object	object of class mark_recapture_object (see mark_recapture_object())
pdf	logical, saves image as pdf-file if TRUE. Defaults to FALSE.
pdf_name	string to name pdf-file, please include ".pdf"!
origin_names	optional, order of the names of the area of origin to be plotted, defaults to NULL. In the default case order of the areas of origin in mark_recapture_object will be chosen.
facet_by_age	logical, determines if the data should be faceted by the age column. Defaults to FALSE.
facet_by_area	logical, determines if the data should be faceted by the area column. Defaults to FALSE.
age_min	numeric. Defaults to 0. If set only data points older than age_min are plotted.
age_max	numeric. If set only data points younger or equal age_max are plotted. Defaults to NULL.
xname	character, name of column containing first dimension, defaults to "longitude".
yname	character, name of column containing second dimension, defaults to "latitude".
timename	character, name of column containing third dimension, defaults to "age".
mark_area_name	character, name of column containing information on areas where marking took place, defaults to "mark_area".
plot_title	character, title of plot, defaults to "".
map	map to plot the data on. Needs to be compatible with ggplot2. For example, map can be ggmap::ggmap(myMap), where myMap is created by ggmap::get_stamenmap.
prj	projection of the coordinates of the dead recoveries. Defaults to "+proj=longlat". For details see ?sf::st_crs. If the data has another projection it will be transformed to the longitude latitude system using sf::st_transform

Value

depending on arguments plot as pdf or to plot to device

Examples

plot_raw_recoveries(mro1D)

SaskiaSchirmer/CONSURE documentation built on Sept. 3, 2023, 8:52 a.m.