SciDoPhenIA/phenomis: Analysis of single and multiple phenomic data sets

This package provides methods to perform the statistical analysis and integration of omics datasets (e.g. in metabolomics and proteomics). These methods include the reading of datasets into an 'ExpressionSet' object ('reading'), quality control ('inspecting'), transformation ('transforming') of the dataMatrix, and univariate hypothesis testing ('hypotesting'). Multivariate analysis, feature selection and annotation, can be further performed with the 'ropls', 'biosigner' and 'biodb' packages, as detailed in the vignette.

Getting started

Package details

AuthorEtienne A. Thevenot <etienne.thevenot@cea.fr>
Bioconductor views Clustering MassSpectrometry Metabolomics Normalization StatisticalMethod
MaintainerEtienne A. Thevenot <etienne.thevenot@cea.fr>
LicenseCeCILL
Version0.4.2
URL https://frama.link/etienne-thevenot
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("SciDoPhenIA/phenomis")
SciDoPhenIA/phenomis documentation built on June 9, 2022, 11:54 p.m.