Description Usage Arguments Details Value Note Author(s) References See Also Examples
~~ A concise (1-5 lines) description of what the function does. ~~
1 | pval2FDR(pval, lim = 0.7)
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pval |
~~Describe |
lim |
~~Describe |
~~ If necessary, more details than the description above ~~
~Describe the value returned If it is a LIST, use
comp1 |
Description of 'comp1' |
comp2 |
Description of 'comp2' |
...
~~further notes~~
~Make other sections like Warning with Warning.... ~
~~who you are~~
~put references to the literature/web site here ~
~~objects to See Also as help
, ~~~
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function(pval, lim = 0.7)
{
n= length(pval)
Fp = rank(pval)/length(pval)
p0 = sum(pval>lim)/((1-lim)*n)
p0 = min(p0, 1)
FDRp = p0 * pmin(pval/Fp, 1)
ord = order(pval)
FDR.o = FDRp[ord]
b = rev(cummin(rev(FDR.o)))
FDR = rep(0, n)
FDR[ord] = b
return(FDR)
}
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