runDVS: DVS Analysis

Description Usage Arguments Examples

View source: R/runDVS.R

Description

DVS Analysis

Usage

1
runDVS(methylKit.obj, covariates)

Arguments

methylKit.obj

methylBase object methylKit.obj

covariates

covariate data frame covariates

variance

cutoff for sites to use based on variance variance

return single site DVS analysis (using limma's lmFit) adjusts for covariates and weights methylation values based on log10(coverage)

Examples

1
DVS<- runDVS(methylkit.obj,covariates=covariates_N63,variance=0.75)

ShanEllis/methylarking documentation built on May 10, 2017, 1:33 p.m.