runDVS: DVS Analysis
In ShanEllis/methylarking: Analyzing RRBS Data
Description
Usage
Arguments
Examples
Description
DVS Analysis
Usage
1
runDVS(methylKit.obj, covariates)
Arguments
methylKit.obj
methylBase object methylKit.obj
covariates
covariate data frame covariates
variance
cutoff for sites to use based on variance variance
return single site DVS analysis (using limma's lmFit)
adjusts for covariates
and weights methylation values based on log10(coverage)
Examples
1
DVS<- runDVS(methylkit.obj,covariates=covariates_N63,variance=0.75)
ShanEllis/methylarking documentation built on May 9, 2019, 1:23 p.m.
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Description Usage Arguments Examples
Description
DVS Analysis
Usage
1 | runDVS(methylKit.obj, covariates)
|
Arguments
methylKit.obj |
methylBase object |
covariates |
covariate data frame |
variance |
cutoff for sites to use based on variance return single site DVS analysis (using limma's lmFit) adjusts for covariates and weights methylation values based on log10(coverage) |
Examples
1 | DVS<- runDVS(methylkit.obj,covariates=covariates_N63,variance=0.75)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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