Description Usage Arguments Examples
DVS Analysis
1 | runDVS(methylKit.obj, covariates)
|
methylKit.obj |
methylBase object |
covariates |
covariate data frame |
variance |
cutoff for sites to use based on variance return single site DVS analysis (using limma's lmFit) adjusts for covariates and weights methylation values based on log10(coverage) |
1 | DVS<- runDVS(methylkit.obj,covariates=covariates_N63,variance=0.75)
|
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