runlimma: DMS Analysis
In ShanEllis/methylarking: Analyzing RRBS Data
Description
Usage
Arguments
Value
Examples
Description
DMS Analysis
Usage
1
runlimma(methylKit.obj, covariates, variance)
Arguments
methylKit.obj
methylBase object methylKit.obj
covariates
covariate data frame covariates
variance
cutoff for sites to use based on variance variance
Value
single site analysis (using limma's lmFit) – adjusts for covariates
and weights methylation values based on log10(coverage)
Examples
1
DMS<- runlimma(methylkit.obj,covariates,variance=0.75)
ShanEllis/methylarking documentation built on May 9, 2019, 1:23 p.m.
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Description Usage Arguments Value Examples
Description
DMS Analysis
Usage
1 | runlimma(methylKit.obj, covariates, variance)
|
Arguments
methylKit.obj |
methylBase object |
covariates |
covariate data frame |
variance |
cutoff for sites to use based on variance |
Value
single site analysis (using limma's lmFit) – adjusts for covariates and weights methylation values based on log10(coverage)
Examples
1 | DMS<- runlimma(methylkit.obj,covariates,variance=0.75)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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