Man pages for ShanEllis/phenopredict
Predicting phenotypes from RNA-seq expression data
| build_predictor | Uses output from filter_regions() to build the predictor |
| cm | Example epression data used to build the predictor. |
| cm_new | Example expression data to be used for prediction. |
| extract_data | Extracts data for predictions using regions from... |
| filter_regions | Filters regions from prediction set to be used to build the... |
| inputdata | Output from filter_regions |
| merge_input | Uses output from select_regions() to merge output before... |
| optimize_numRegions | Optimize number of regions used for prediction |
| pheno | Example phenotype data. |
| predictor | Output from build_predictor |
| predictor_samplesource | Prebuilt sample source predictor |
| predictor_sequencingstrategy | Prebuilt sequencing strategy predictor |
| predictor_sex | Prebuilt sex predictor |
| predictor_tissue | Prebuilt tissue predictor |
| predict_pheno | Makes predictions for selected phenotype |
| regiondata | Information about regions included |
| test_predictor | Test accuracy of predictor on known phenotypes |
